Rmu_ssc0000419.1_g000010

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000419.1
OG0002425
Physical Location & Seq
Forward (+)
44981 .. 46059
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
atggctactgagttcactacgaaagttcgactagttagatgtcctaaatgccggctgcttctaccggagctgccggattttcaggtctacaagtgtggtggatgtggtgcgattctcctagcgaaaagtcgtctaaacggtctgagaagcaggagcactggtttaaatggaacagtggcagctcagatgaatgatggattgggtcacgtttctgaacatagggcatccagcagcacaagttgtaatggaactctttctgactcgggagaatgctcttcagaccaaatcgatgagaagaatcaaagtaagttttccagagaatgctctttggaaagaaagagtgagagggatgagaatgagtcttcagaaggcactgaatctagcagctcaagtctaaagggtaaggctcctgcctcgggagaattatctttggaaagaaggaatgagagggatgggtgcaattcttcaggaagcattgaatccagctcaagtctaaaggcttcggctcctgcctcaggagaatgctctttgaaaaggaggagtgagagggatgggaataagtcttcagaaggcattgaatctagcagctcaagtctaaaggcttcggctcctgcctcggaagaattctattcggaaagaaggaatgagaggaatgggagtaggtcttcagaaagcattgaatctagcagctcaagtaaggctactgcctcgaagagttcgtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

241

Amino Acids

25.55

Weight (kDa)

7.5

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 8 - 41 1e-18 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 5 cut(s) 261, 348, 450, 549, 651
AfiI CCNNNNNNNGG 2 cut(s) 416, 515
AgsI TTSAA 4 cut(s) 479, 532, 578, 680
AhlI ACTAGT 1 cut(s) 31
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 70, 182, 387, 486, 588, 690
AluI AGCT 6 cut(s) 70, 182, 387, 486, 588, 690
Alw21I GWGCWC 1 cut(s) 158
Ama87I CYCGRG 2 cut(s) 262, 415
ApeKI GCWGC 7 cut(s) 55, 70, 179, 231, 384, 585, 687
ApoI RAATTY 1 cut(s) 623
ArsI GACNNNNNNTTYG 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 253
AvaI CYCGRG 2 cut(s) 262, 415
AxyI CCTNAGG 1 cut(s) 514
BbsI GAAGAC 3 cut(s) 354, 555, 657
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 7 cut(s) 42, 57, 191, 243, 396, 597, 699
BccI CCATC 3 cut(s) 188, 446, 545
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 5 cut(s) 32, 119, 381, 582, 684
BisI GCNGC 7 cut(s) 56, 71, 180, 232, 385, 586, 688
BlsI GCNGC 7 cut(s) 57, 72, 181, 233, 386, 587, 689
BmeT110I CYCGRG 2 cut(s) 262, 415
BmiI GGNNCC 3 cut(s) 408, 507, 609
BmsI GCATC 1 cut(s) 233
BpiI GAAGAC 3 cut(s) 354, 555, 657
BpuEI CTTGAG 4 cut(s) 373, 472, 574, 676
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 414, 615
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 515
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 414, 615
BseGI GGATG 5 cut(s) 107, 224, 355, 457, 556
BseLI CCNNNNNNNGG 2 cut(s) 416, 515
BseMII CTCAG 3 cut(s) 134, 197, 528
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 553
BseXI GCAGC 7 cut(s) 42, 57, 191, 243, 396, 597, 699
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 2 cut(s) 262, 415
BsiSI CCGG 3 cut(s) 52, 65, 74
BslI CCNNNNNNNGG 2 cut(s) 416, 515
BsmI GAATGC 3 cut(s) 275, 326, 527
BsoBI CYCGRG 2 cut(s) 262, 415
Bsp1286I GDGCHC 1 cut(s) 158
BspCNI CTCAG 3 cut(s) 135, 196, 527
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 408, 507, 609
BspQI GCTCTTC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 414, 615
Bst4CI ACNGT 2 cut(s) 140, 175
Bst6I CTCTTC 2 cut(s) 280, 707
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 4 cut(s) 9, 143, 183, 514
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 5 cut(s) 107, 224, 355, 457, 556
BstV1I GCAGC 7 cut(s) 42, 57, 191, 243, 396, 597, 699
BstV2I GAAGAC 3 cut(s) 354, 555, 657
Bsu15I ATCGAT 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 514
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 5 cut(s) 107, 224, 355, 457, 556
BtsIMutI CAGTG 3 cut(s) 156, 180, 372
Cac8I GCNNGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
DdeI CTNAG 4 cut(s) 9, 143, 183, 514
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 280, 707
EarI CTCTTC 2 cut(s) 280, 707
Eco57I CTGAAG 5 cut(s) 261, 348, 450, 549, 651
Eco81I CCTNAGG 1 cut(s) 514
Eco88I CYCGRG 2 cut(s) 262, 415
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 623
FaiI YATR 1 cut(s) 219
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 7 cut(s) 56, 71, 180, 232, 385, 586, 688
FokI GGATG 5 cut(s) 114, 211, 362, 464, 563
Fsp4HI GCNGC 7 cut(s) 56, 71, 180, 232, 385, 586, 688
FspBI CTAG 5 cut(s) 32, 119, 381, 582, 684
GluI GCNGC 7 cut(s) 56, 71, 180, 232, 385, 586, 688
HapII CCGG 3 cut(s) 52, 65, 74
HinfI GANTC 8 cut(s) 112, 260, 298, 359, 377, 479, 578, 680
HpaII CCGG 3 cut(s) 52, 65, 74
Hpy166II GTNNAC 2 cut(s) 15, 88
Hpy188III TCNNGA 5 cut(s) 264, 315, 417, 468, 516
Hpy8I GTNNAC 2 cut(s) 15, 88
HpyAV CCTTC 4 cut(s) 362, 432, 563, 633
HpyCH4III ACNGT 2 cut(s) 140, 175
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 459
HpyF3I CTNAG 4 cut(s) 9, 143, 183, 514
HpySE526I ACGT 1 cut(s) 207
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 5 cut(s) 67, 153, 412, 511, 613
Lsp1109I GCAGC 7 cut(s) 42, 57, 191, 243, 396, 597, 699
LweI GCATC 1 cut(s) 233
MaeI CTAG 5 cut(s) 32, 119, 381, 582, 684
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 8 cut(s) 267, 307, 354, 456, 555, 632, 657, 724
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 3 cut(s) 422, 460, 623
MlyI GAGTC 2 cut(s) 254, 368
MnlI CCTC 9 cut(s) 339, 424, 441, 523, 531, 540, 625, 642, 718
MroNI GCCGGC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 2 cut(s) 164, 724
MspI CCGG 3 cut(s) 52, 65, 74
Mva1269I GAATGC 3 cut(s) 275, 326, 527
NaeI GCCGGC 1 cut(s) 53
NgoMIV GCCGGC 1 cut(s) 51
NlaIV GGNNCC 3 cut(s) 408, 507, 609
NmuCI GTSAC 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PctI GAATGC 3 cut(s) 275, 326, 527
PdiI GCCGGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 6 cut(s) 112, 298, 377, 479, 578, 680
PkrI GCNGC 7 cut(s) 57, 72, 181, 233, 386, 587, 689
PleI GAGTC 2 cut(s) 254, 367
PpsI GAGTC 2 cut(s) 254, 367
PspN4I GGNNCC 3 cut(s) 408, 507, 609
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 164, 724
SatI GCNGC 7 cut(s) 56, 71, 180, 232, 385, 586, 688
SchI GAGTC 2 cut(s) 254, 368
SduI GDGCHC 1 cut(s) 158
SetI ASST 9 cut(s) 72, 87, 184, 210, 389, 488, 590, 665, 692
SfaNI GCATC 1 cut(s) 233
SmlI CTYRAG 4 cut(s) 388, 487, 589, 691
SmoI CTYRAG 4 cut(s) 388, 487, 589, 691
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 3 cut(s) 422, 460, 623
SspMI CTAG 5 cut(s) 32, 119, 381, 582, 684
TaaI ACNGT 2 cut(s) 140, 175
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 28, 288, 710
TasI AATT 3 cut(s) 422, 460, 623
TfiI GAWTC 6 cut(s) 112, 298, 377, 479, 578, 680
Tru1I TTAA 2 cut(s) 164, 724
Tru9I TTAA 2 cut(s) 164, 724
TscAI CASTG 3 cut(s) 163, 180, 379
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 7 cut(s) 55, 70, 179, 231, 384, 585, 687
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 3 cut(s) 163, 180, 379
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 5 cut(s) 32, 119, 381, 582, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.