Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Forward (+)

13251646 .. 13266186

Gene Structure 14541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGACCCACCTCAAACGAGTTCGAGTCCAAGTCGGTGATCAACTCACTCCACAAAGATCGCCGAGTCGTCCGAGTCCGAGTTTTGGTCGATGGTGGAGGCAAGCGGGAATTACGAGACAAGGAGAATGCTGATCATGAATTGTATTTACAGGTGACGTCACAGGTTGAGAACTGCCTTGCTTATTTGCAGGAAAAAAGAGAGAATGGAAACCTCTCGGATTTAGCTCGACAAGGATTGTTTGGTGGAAGTGAGTCCTTTTTGGATGTTGAAAGTGCTCGATTGAAATTCTCTTGCATCGCTCGGTCCCGATTACAAAGAACTGAACTCATCACCGCAACTCTCGGGCGCCTTTGCTCGCCGACCGCTCCGGCCTTTTCATCTGTCCGATCTCGGCCTCTCTCATATCTCTCGGGTACCATTCTTTTCCTACCGCAAGACTTCGAATTCTTGATGGATGTGGATAGTAGGGAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

160

Amino Acids

18.13

Weight (kDa)

6.17

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	348, 416
AccBSI	CCGCTC	1 cut(s)	368
AciI	CCGC	4 cut(s)	106, 336, 366, 434
AcsI	RAATTY	2 cut(s)	287, 446
AcyI	GRCGYC	2 cut(s)	158, 349
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	272, 286
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	111
Ama87I	CYCGRG	2 cut(s)	344, 412
AoxI	GGCC	2 cut(s)	372, 395
ApoI	RAATTY	2 cut(s)	287, 446
Asp718I	GGTACC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	49, 166, 325
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	2 cut(s)	344, 412
AvaII	GGWCC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	348, 416
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	2 cut(s)	86, 448
BclI	TGATCA	2 cut(s)	39, 133
BcoDI	GTCTC	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	2 cut(s)	344, 412
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	3 cut(s)	308, 350, 418
BmsI	GCATC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	444
BsaHI	GRCGYC	2 cut(s)	158, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	271, 463
BseLI	CCNNNNNNNGG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	374, 397
BshNI	GGYRCC	2 cut(s)	348, 416
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	344, 412
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	374, 397
BsoBI	CYCGRG	2 cut(s)	344, 412
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	39, 58, 133, 389
BspACI	CCGC	4 cut(s)	106, 336, 366, 434
BspANI	GGCC	2 cut(s)	374, 397
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	308, 350, 418
BspT104I	TTCGAA	1 cut(s)	444
BspT107I	GGYRCC	2 cut(s)	348, 416
BsrBI	CCGCTC	1 cut(s)	368
BssMI	GATC	4 cut(s)	39, 58, 133, 389
BssNI	GRCGYC	2 cut(s)	158, 349
BstACI	GRCGYC	2 cut(s)	158, 349
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	104, 359
BstF5I	GGATG	2 cut(s)	271, 463
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	42, 61, 136, 392
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	4 cut(s)	39, 58, 133, 389
BstMCI	CGRYCG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	374, 397
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	271, 463
Cac8I	GCNNGC	2 cut(s)	104, 359
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	3 cut(s)	227, 374, 397
CviKI_1	RGCY	3 cut(s)	227, 374, 397
CviQI	GTAC	1 cut(s)	417
DinI	GGCGCC	1 cut(s)	350
DpnI	GATC	4 cut(s)	41, 60, 135, 391
DpnII	GATC	4 cut(s)	39, 58, 133, 389
Eco47I	GGWCC	1 cut(s)	306
Eco88I	CYCGRG	2 cut(s)	344, 412
EcoRI	GAATTC	1 cut(s)	446
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	138, 406
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	136
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	2 cut(s)	39, 133
FokI	GGATG	2 cut(s)	278, 470
GlaI	GCGC	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	374, 397
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	2 cut(s)	158, 349
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	26, 66, 75, 254
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	49, 166, 325
Hpy188I	TCNGA	4 cut(s)	74, 80, 220, 389
Hpy188III	TCNNGA	3 cut(s)	137, 309, 451
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	190, 297
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	2 cut(s)	158, 349
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	349
KasI	GGCGCC	1 cut(s)	348
KpnI	GGTACC	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	39, 133
Kzo9I	GATC	4 cut(s)	39, 58, 133, 389
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	4 cut(s)	137, 149, 176, 384
LweI	GCATC	1 cut(s)	306
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	154, 159
MalI	GATC	4 cut(s)	41, 60, 135, 391
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	4 cut(s)	39, 58, 133, 389
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	110, 140, 287, 446
Mly113I	GGCGCC	1 cut(s)	349
MlyI	GAGTC	4 cut(s)	35, 75, 84, 263
MnlI	CCTC	5 cut(s)	22, 92, 224, 408, 466
MspI	CCGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	349
NdeII	GATC	4 cut(s)	39, 58, 133, 389
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	3 cut(s)	308, 350, 418
NmeAIII	GCCGAG	2 cut(s)	89, 373
NmuCI	GTSAC	2 cut(s)	154, 159
NspV	TTCGAA	1 cut(s)	444
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	133
PleI	GAGTC	4 cut(s)	34, 74, 83, 262
PluTI	GGCGCC	1 cut(s)	352
PpsI	GAGTC	4 cut(s)	34, 74, 83, 262
PspN4I	GGNNCC	3 cut(s)	308, 350, 418
PspPI	GGNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	39, 58, 133, 389
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	4 cut(s)	35, 75, 84, 263
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	6 cut(s)	14, 156, 161, 168, 216, 229
SfaNI	GCATC	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	306
Sse9I	AATT	4 cut(s)	110, 140, 287, 446
SsiI	CCGC	4 cut(s)	106, 336, 366, 434
SspDI	GGCGCC	1 cut(s)	348
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	5 cut(s)	24, 90, 229, 280, 444
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	110, 140, 287, 446
TseFI	GTSAC	2 cut(s)	154, 159
Tsp45I	GTSAC	2 cut(s)	154, 159
TspDTI	ATGAA	2 cut(s)	153, 369
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	287, 446
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.