Rroxscaffold_5G00337410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005565
Physical Location & Seq
Reverse (-)
5560214 .. 5575489
15276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337410.1

Sequence Viewer

Length: 468 bp
ATGGAAGAGATCAGCCTTATAAAAGAAGAAGTTCAGTTTCCGCGAGTTATAATCTTCGAGGAATGGAAACCTCTGGATTTGGCTCGACAAGGATTATTTGGTGGAAGTGAGTCCTTTTTGGATGTTGAAAGTGCTCGATTGAAAGTTTTTTGCAGCTCGAGCGGTCTTGAGCCTATTCTAGAGACTCCGGCCAATTCAAGGCGGCGCACCGGTCGCGGGACCGTCGTACTTGTCCACGGCGCTGTTCGGGGACTCAATGCAGCCTGCGAGCCTCGAAGGATTAGAACGGACCCAAGAGAGCTTGGAGTTCAAAAACGAATAATGTATAACAACCAAGAACAGAGAGATAGGTCTGTGATAAATAAGAGAACAGAGAATTTCAGGCAGAGAAATGATAGAGAAGTAGAGGCGATGTTAAAGATGAGGAGTGGTGATATCGAAGTGGGTGATGAATTGGAAGGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.79

Weight (kDa)

6.64

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 20, 50
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 2 cut(s) 43, 216
AciI CCGC 4 cut(s) 41, 162, 202, 216
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 198, 216
AgeI ACCGGT 1 cut(s) 209
AgsI TTSAA 4 cut(s) 128, 142, 198, 311
AluBI AGCT 2 cut(s) 156, 301
AluI AGCT 2 cut(s) 156, 301
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 153, 260
ApoI RAATTY 1 cut(s) 376
AsiGI ACCGGT 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 2 cut(s) 207, 242
AspS9I GGNCC 2 cut(s) 219, 289
AsuHPI GGTGA 2 cut(s) 443, 458
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 2 cut(s) 219, 289
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 165, 272
BceAI ACGGC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 3 cut(s) 154, 203, 261
BlsI GCNGC 3 cut(s) 155, 204, 262
Bme18I GGWCC 2 cut(s) 219, 289
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 219, 289
BmiI GGNNCC 2 cut(s) 220, 291
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 216
Bse118I RCCGGY 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 198, 216
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 165, 272
Bsh1236I CGCG 2 cut(s) 43, 216
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 188, 210
BslFI GGGAC 2 cut(s) 232, 264
BslI CCNNNNNNNGG 2 cut(s) 198, 216
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 232, 264
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 4 cut(s) 41, 162, 202, 216
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 2 cut(s) 43, 216
BspLI GGNNCC 2 cut(s) 220, 291
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 265, 269
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 43, 216
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 207, 242
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 159, 213
BstNSI RCATGY 1 cut(s) 466
BstUI CGCG 2 cut(s) 43, 216
BstV1I GCAGC 2 cut(s) 165, 272
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 265, 269
CfoI GCGC 2 cut(s) 207, 242
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 219, 289
Csp6I GTAC 1 cut(s) 227
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 1 cut(s) 463
CviJI RGCY 8 cut(s) 15, 83, 156, 172, 191, 263, 271, 301
CviKI_1 RGCY 8 cut(s) 15, 83, 156, 172, 191, 263, 271, 301
CviQI GTAC 1 cut(s) 227
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 189
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 219, 289
Eco88I CYCGRG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 436
FaeI CATG 1 cut(s) 466
FaiI YATR 4 cut(s) 20, 50, 327, 464
FaqI GGGAC 2 cut(s) 232, 264
FatI CATG 1 cut(s) 462
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 154, 203, 261
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 154, 203, 261
FspBI CTAG 1 cut(s) 179
GlaI GCGC 2 cut(s) 206, 241
GluI GCNGC 3 cut(s) 154, 203, 261
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 188, 210
HhaI GCGC 2 cut(s) 207, 242
Hin1II CATG 1 cut(s) 466
Hin6I GCGC 2 cut(s) 205, 240
HinP1I GCGC 2 cut(s) 205, 240
HinfI GANTC 3 cut(s) 110, 184, 252
HpaII CCGG 2 cut(s) 188, 210
HphI GGTGA 2 cut(s) 443, 458
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 74, 167, 179
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 270, 452
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 153, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 213
Hsp92II CATG 1 cut(s) 466
HspAI GCGC 2 cut(s) 205, 240
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 59, 201, 223, 277, 367
Lsp1109I GCAGC 2 cut(s) 165, 272
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 162
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 17, 38, 46
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 193, 376, 452
MlyI GAGTC 3 cut(s) 119, 178, 246
MnlI CCTC 5 cut(s) 52, 81, 282, 400, 417
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 416
MspI CCGG 2 cut(s) 188, 210
MvnI CGCG 2 cut(s) 43, 216
MwoI GCNNNNNNNGC 2 cut(s) 159, 213
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 2 cut(s) 220, 291
NspI RCATGY 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 3 cut(s) 155, 204, 262
PleI GAGTC 3 cut(s) 118, 178, 246
PpsI GAGTC 3 cut(s) 118, 178, 246
PsiI TTATAA 2 cut(s) 20, 50
PspN4I GGNNCC 2 cut(s) 220, 291
PspPI GGNCC 2 cut(s) 219, 289
PspXI VCTCGAGB 1 cut(s) 157
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 3 cut(s) 154, 203, 261
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 219, 289
SchI GAGTC 3 cut(s) 119, 178, 246
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 73, 158, 303, 353
Sfr274I CTCGAG 1 cut(s) 157
SinI GGWCC 2 cut(s) 219, 289
SlaI CTCGAG 1 cut(s) 157
SmlI CTYRAG 2 cut(s) 157, 167
SmoI CTYRAG 2 cut(s) 157, 167
Sse9I AATT 3 cut(s) 193, 376, 452
SsiI CCGC 4 cut(s) 41, 162, 202, 216
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 6 cut(s) 57, 85, 136, 158, 274, 438
TasI AATT 3 cut(s) 193, 376, 452
TauI GCSGC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TseI GCWGC 2 cut(s) 153, 260
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 219, 289
XapI RAATTY 1 cut(s) 376
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.