Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Forward (+)

38862001 .. 38862646

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAAAACCAGAACCTTCACGGTGGCGTAGCTAAGTCTTCTGCCAATCCCATTGTCGTGGAGGAGCAATTGTTGCAAAAGAGAGCTGGAACTATAGGGGTAAATTGTGTAAAATCGATTGTGGTTGGGAATTGCTGCATTGACAAGTTGGACTCGGCAGAATTAGATTTGGGTAAGGAATACAAGTCCCTTGATATATTTGGCAAGGTTGGAAAATTAATCGAGAAAACTGGGAGGCTCCTGGATGCCATGCTGTTAGTCGGTGACATTACTCCTGCAATTTGTACCATTGAAGAGAATGATTGTGGGTGTGCAAAAAGGTTGGAAGGTGTCGGGTGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

114

Amino Acids

12.09

Weight (kDa)

5.8

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	32, 86
AluI	AGCT	2 cut(s)	32, 86
ApeKI	GCWGC	1 cut(s)	135
AseI	ATTAAT	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	239, 338
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	116
BseGI	GGATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	341
BspDI	ATCGAT	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	239, 338
BspT107I	GGYRCC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	3 cut(s)	32, 86, 238
CviKI_1	RGCY	3 cut(s)	32, 86, 238
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	253
FaiI	YATR	4 cut(s)	95, 197, 251, 343
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	26, 320
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	76, 138, 278, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	64, 243
LpnPI	CCDG	6 cut(s)	23, 72, 216, 227, 254, 288
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	30, 305
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	6 cut(s)	68, 103, 130, 161, 215, 279
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	129, 190, 303
MnlI	CCTC	2 cut(s)	55, 228
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	239, 338
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	239, 338
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	6 cut(s)	18, 34, 88, 210, 323, 331
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	68, 103, 130, 161, 215, 279
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	116, 222
TasI	AATT	6 cut(s)	68, 103, 130, 161, 215, 279
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.