Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Forward (+)

35887839 .. 35897080

Gene Structure 9242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTCGATGACAAGGTTATAAAGCTTTGGGACCGGGAGAAGGACCGGGAATGCGATCGAGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCAAATGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCGACTTTTACATTACAAGGCCACTCAAAAGGAGTGAATTGTGTTGATTACTTCATTCACAGCGATAAGACTTACCTGTCAAGTGGTTCCGATAACTTCACCGCCAAGAATGATGAGAAGCAAAGTGATGAAACAAAAGACCTCCAAGTTATATATGCTCGACTTGTGGGTAACGAATCATCACTTTCCCCAAAGCCAAAATATCAAGAAGGAAAAAGGAAGGTGCATGATAGCGAAATAATGGAAGGTTTAGGAGACTTGTGCAATATGGTCATGATATATGATGATGATTTTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

4.86

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	2 - 60	1.9e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	3 - 95	6.1e-18	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	3 - 94	4e-15	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	3 - 92	1.2e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	3 - 70	3.9e-09	WDHD1 first WD40 domain
WD40_Prp19	PF24814	4 - 101	1.7e-11	Prp19 WD40 domain
WD40_Gbeta	PF25391	4 - 103	1.5e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	4 - 92	2.8e-08	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 90	3e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	17 - 55	5.2e-08	WD domain, G-beta repeat
WD40	PF00400	61 - 94	3.8e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AasI	GACNNNNNNGTC	1 cut(s)	256
AciI	CCGC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	429
AoxI	GGCC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	31, 43
AsuC2I	CCSGG	2 cut(s)	35, 47
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	31, 43
BccI	CCATC	1 cut(s)	137
BcnI	CCSGG	2 cut(s)	35, 47
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	35, 47
Bme18I	GGWCC	2 cut(s)	31, 43
BmgT120I	GGNCC	2 cut(s)	31, 43
BmiI	GGNNCC	3 cut(s)	32, 148, 268
BmrFI	CCNGG	2 cut(s)	35, 47
BmsI	GCATC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	35, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	34, 46
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	56, 73
BsnI	GGCC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	32, 148, 268
BspQI	GCTCTTC	1 cut(s)	178
BssMI	GATC	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	55
BstMCI	CGRYCG	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	33, 45
BsuRI	GGCC	1 cut(s)	201
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	31, 43
CviAII	CATG	3 cut(s)	159, 407, 454
CviJI	RGCY	5 cut(s)	25, 98, 171, 201, 376
CviKI_1	RGCY	5 cut(s)	25, 98, 171, 201, 376
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	31, 43
FaeI	CATG	3 cut(s)	162, 410, 457
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	158, 406, 453
FspBI	CTAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	34, 46
Hin1II	CATG	3 cut(s)	162, 410, 457
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	60, 356
HpaII	CCGG	2 cut(s)	34, 46
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	140, 386, 454
HpyAV	CCTTC	4 cut(s)	34, 383, 394, 419
HpyCH4V	TGCA	3 cut(s)	91, 406, 444
Hsp92II	CATG	3 cut(s)	162, 410, 457
Kzo9I	GATC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	47, 59, 269
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	350, 476
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	61, 145, 332
MseI	TTAA	1 cut(s)	153
MspI	CCGG	2 cut(s)	34, 46
MspR9I	CCNGG	2 cut(s)	35, 47
Mva1269I	GAATGC	2 cut(s)	56, 73
NciI	CCSGG	2 cut(s)	35, 47
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	162, 410, 457
NlaIV	GGNNCC	3 cut(s)	32, 148, 268
NmuCI	GTSAC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	178
PctI	GAATGC	2 cut(s)	56, 73
PfeI	GAWTC	1 cut(s)	356
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PsiI	TTATAA	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	32, 148, 268
PspPI	GGNCC	2 cut(s)	31, 43
PvuI	CGATCG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	2 cut(s)	31, 43
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	35, 47
SetI	ASST	6 cut(s)	18, 27, 258, 324, 405, 430
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	2 cut(s)	31, 43
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	33, 45
TaqI	TCGA	4 cut(s)	6, 58, 141, 340
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	223, 324
VpaK11BI	GGWCC	2 cut(s)	31, 43
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.