Rroxscaffold_6G00389770

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005565
Physical Location & Seq
Reverse (-)
3832132 .. 3832617
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389770.1

Sequence Viewer

Length: 387 bp
ATGGTAGAGTTTCCGCCGGGCACGGTGGTAGCAGCGAAGGTAGAGAAGAGGAAGGATGGTTGTGGCAGTTCAAGTCCGAAATGGGAGCTGGAGGGAAGCAATGATCATGCCGAAATCAGTACGCCAACCATTGATCTTCGGGGCAAAGCGCAAGGAGACCCACCTTACGAGCCGAGCTCATCCCGAAAGTTCGTTATGCATGATAGTGAGCTTAAAAAGAAGTTTTATAAGCGGTTTGGGACGAAGGTGTTTTATCGGTCCAACTACAATTCGTACCAATCTTCATCGGCTGATTGGAGGGCTACATTGGGCTGTTTTGTGGCTCTTGATCCACCCAAACCAGAAGAAGTACCCTCGGTTGTAGTTTTGGCAAGGTTGAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

128

Amino Acids

14.29

Weight (kDa)

9.08

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AciI CCGC 2 cut(s) 14, 232
AclWI GGATC 1 cut(s) 323
AfaI GTAC 3 cut(s) 121, 275, 351
AgsI TTSAA 2 cut(s) 72, 379
AluBI AGCT 3 cut(s) 88, 177, 211
AluI AGCT 3 cut(s) 88, 177, 211
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 50
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 150
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 2 cut(s) 61, 179
BseMI GCAATG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 23, 179
Bsp143I GATC 3 cut(s) 103, 133, 328
BspACI CCGC 2 cut(s) 14, 232
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 3 cut(s) 103, 133, 328
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 41
BstF5I GGATG 2 cut(s) 61, 179
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 106, 136, 331
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 103, 133, 328
BstSCI CCNGG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 61, 179
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 120, 274, 350
CviAII CATG 2 cut(s) 107, 200
CviJI RGCY 8 cut(s) 88, 172, 177, 211, 290, 302, 312, 323
CviKI_1 RGCY 8 cut(s) 88, 172, 177, 211, 290, 302, 312, 323
CviQI GTAC 3 cut(s) 120, 274, 350
DpnI GATC 3 cut(s) 105, 135, 330
DpnII GATC 3 cut(s) 103, 133, 328
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 2 cut(s) 110, 203
FaiI YATR 4 cut(s) 108, 197, 201, 228
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 106, 199
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 68, 166
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 33
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 110
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 110, 203
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HpaII CCGG 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 183, 326
HpyAV CCTTC 3 cut(s) 31, 46, 238
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 199
Hsp92II CATG 2 cut(s) 110, 203
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 103, 133, 328
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 30, 74, 354
Lsp1109I GCAGC 1 cut(s) 44
MalI GATC 3 cut(s) 105, 135, 330
MboI GATC 3 cut(s) 103, 133, 328
MboII GAAGA 4 cut(s) 58, 128, 273, 356
MhlI GDGCHC 2 cut(s) 23, 179
MluCI AATT 2 cut(s) 268, 382
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 42, 85, 291, 364
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 2 cut(s) 213, 385
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 18
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 103, 133, 328
NlaIII CATG 2 cut(s) 110, 203
NmeAIII GCCGAG 1 cut(s) 198
NsiI ATGCAT 1 cut(s) 201
PkrI GCNGC 1 cut(s) 34
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 258
RsaI GTAC 3 cut(s) 121, 275, 351
RsaNI GTAC 3 cut(s) 120, 274, 350
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 213, 385
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 103, 133, 328
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 23, 179
SetI ASST 7 cut(s) 42, 90, 166, 179, 213, 249, 377
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 268, 382
SsiI CCGC 2 cut(s) 14, 232
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 25
TaqII GACCGA 1 cut(s) 246
TasI AATT 2 cut(s) 268, 382
Tru1I TTAA 2 cut(s) 213, 385
Tru9I TTAA 2 cut(s) 213, 385
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.