Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Reverse (-)

32426708 .. 32430467

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATGAGTACGATAGCGGTGGCCGCAGCGGCGATAAGGGTCCCGTGGGCGAGGAAGAAATCTCGGCTCCTATTCCCGACAAGGTCCGGGTTGGTGGTTCCCCGCTGTACAAAGTAGAGAGGAAATTGGGGAAAGGAGGCTTTGGACAAGTATATGTTGGCCGGCGCACTGCACCCGGCCCCGGAGCCATTGAGGTTGCCTTGAAATTGAGCATAGAAGCGAGTAAAGGATGTAATTATGGCCCACCATATGAATGGCAAATTTACAATGCGCTTGGTGGTGGTCATGGAGTTCCAAGAGTTCATTATAAGGGCCGGCAAGCTGACTACTATATCATGGTTATGGCAATGGGAAGATATGAAGACCCAAATAGTGCGGCTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGGTCGGTACGCAATTTTTGGTGATCAATGGTTTGAGATGATGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCGGGATTGGAGATCCATCAAATGTACGGAAACAAACGGGAAGCTTTGCAGAAGCCTTTGAAGCACATGAAGAACACTTCAAAGGATAACTTAGAAAAAGTGCAAATGTGGAGAGCTGCTTTGACCGAAGTGGCCAATCTTTCTGGATTTCATCTCCAAGATGGGGATACGCAAATAGATATGTACAAGGGGACTGCTGATACGAAAGGGATACTGCAAGCACAACCCCAGGGAAATGGTGAAGGTAATTGCCCCTCTTATGCAACATGCCCGACAAAGTTTGGGAGTTTAGATTATGTGAAAAGGTCTACTCGGCTGGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

275

Amino Acids

30.13

Weight (kDa)

6.32

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	809
AciI	CCGC	6 cut(s)	18, 25, 30, 104, 377, 503
AclWI	GGATC	2 cut(s)	484, 508
AcoI	YGGCCR	3 cut(s)	22, 160, 633
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	5 cut(s)	11, 110, 431, 527, 686
AfiI	CCNNNNNNNGG	2 cut(s)	182, 664
AgsI	TTSAA	4 cut(s)	205, 494, 562, 582
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	3 cut(s)	323, 545, 617
AluI	AGCT	3 cut(s)	323, 545, 617
AlwI	GGATC	2 cut(s)	484, 508
AoxI	GGCC	6 cut(s)	22, 160, 178, 241, 313, 633
ApeKI	GCWGC	4 cut(s)	27, 486, 500, 617
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	168, 274
AspS9I	GGNCC	5 cut(s)	41, 85, 179, 242, 313
AsuC2I	CCSGG	3 cut(s)	89, 177, 183
AsuHPI	GGTGA	2 cut(s)	455, 752
AvaII	GGWCC	2 cut(s)	41, 85
BalI	TGGCCA	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	369, 501
BbvI	GCAGC	4 cut(s)	39, 473, 512, 604
BccI	CCATC	4 cut(s)	416, 457, 525, 656
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	2 cut(s)	661, 705
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	3 cut(s)	89, 177, 183
BfuI	GTATCC	2 cut(s)	661, 705
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	7 cut(s)	25, 28, 31, 378, 487, 501, 618
BlsI	GCNGC	7 cut(s)	26, 29, 32, 379, 488, 502, 619
Bme1390I	CCNGG	4 cut(s)	89, 177, 183, 731
Bme18I	GGWCC	2 cut(s)	41, 85
BmgT120I	GGNCC	5 cut(s)	41, 85, 179, 242, 313
BmiI	GGNNCC	6 cut(s)	42, 43, 69, 100, 181, 187
BmrFI	CCNGG	4 cut(s)	89, 177, 183, 731
BmsI	GCATC	2 cut(s)	384, 397
BpiI	GAAGAC	2 cut(s)	369, 501
BpuMI	CCSGG	3 cut(s)	89, 177, 183
BsaJI	CCNNGG	4 cut(s)	45, 181, 729, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 664
Bse118I	RCCGGY	2 cut(s)	162, 315
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	4 cut(s)	45, 181, 729, 730
BseGI	GGATG	2 cut(s)	10, 236
BseLI	CCNNNNNNNGG	2 cut(s)	182, 664
BseMI	GCAATG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	4 cut(s)	39, 473, 512, 604
BsgI	GTGCAG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	6 cut(s)	24, 162, 180, 243, 315, 635
BsiEI	CGRYCG	1 cut(s)	472
BsiSI	CCGG	5 cut(s)	88, 163, 177, 183, 316
BslFI	GGGAC	2 cut(s)	27, 706
BslI	CCNNNNNNNGG	2 cut(s)	182, 664
BsmFI	GGGAC	2 cut(s)	27, 706
BsnI	GGCC	6 cut(s)	24, 162, 180, 243, 315, 635
Bsp1407I	TGTACA	2 cut(s)	108, 684
Bsp143I	GATC	4 cut(s)	445, 469, 476, 513
BspACI	CCGC	6 cut(s)	18, 25, 30, 104, 377, 503
BspANI	GGCC	6 cut(s)	24, 162, 180, 243, 315, 635
BspLI	GGNNCC	6 cut(s)	42, 43, 69, 100, 181, 187
BspPI	GGATC	2 cut(s)	484, 508
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	162, 315
BsrGI	TGTACA	2 cut(s)	108, 684
BssAI	RCCGGY	2 cut(s)	162, 315
BssECI	CCNNGG	4 cut(s)	45, 181, 729, 730
BssMI	GATC	4 cut(s)	445, 469, 476, 513
Bst2UI	CCWGG	1 cut(s)	731
BstAUI	TGTACA	2 cut(s)	108, 684
BstC8I	GCNNGC	4 cut(s)	164, 317, 321, 720
BstDEI	CTNAG	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	10, 236
BstHHI	GCGC	2 cut(s)	168, 274
BstKTI	GATC	4 cut(s)	448, 472, 479, 516
BstMBI	GATC	4 cut(s)	445, 469, 476, 513
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 30, 562
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	4 cut(s)	87, 175, 181, 729
BstV1I	GCAGC	4 cut(s)	39, 473, 512, 604
BstV2I	GAAGAC	2 cut(s)	369, 501
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	2 cut(s)	255, 737
BstYI	RGATCY	1 cut(s)	513
BsuI	GTATCC	2 cut(s)	661, 705
BsuRI	GGCC	6 cut(s)	24, 162, 180, 243, 315, 635
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	10, 236
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	4 cut(s)	164, 317, 321, 720
CfoI	GCGC	2 cut(s)	168, 274
Cfr10I	RCCGGY	2 cut(s)	162, 315
Cfr13I	GGNCC	5 cut(s)	41, 85, 179, 242, 313
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	5 cut(s)	10, 109, 430, 526, 685
CviAII	CATG	4 cut(s)	287, 337, 568, 768
CviQI	GTAC	5 cut(s)	10, 109, 430, 526, 685
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	4 cut(s)	447, 471, 478, 515
DpnII	GATC	4 cut(s)	445, 469, 476, 513
EaeI	YGGCCR	3 cut(s)	22, 160, 633
Eco47I	GGWCC	2 cut(s)	41, 85
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	729
FaeI	CATG	4 cut(s)	290, 340, 571, 771
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	27, 706
FatI	CATG	4 cut(s)	286, 336, 567, 767
FauI	CCCGC	2 cut(s)	111, 496
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	7 cut(s)	25, 28, 31, 378, 487, 501, 618
FokI	GGATG	2 cut(s)	17, 243
Fsp4HI	GCNGC	7 cut(s)	25, 28, 31, 378, 487, 501, 618
GlaI	GCGC	2 cut(s)	167, 273
GluI	GCNGC	7 cut(s)	25, 28, 31, 378, 487, 501, 618
HaeIII	GGCC	6 cut(s)	24, 162, 180, 243, 315, 635
HapII	CCGG	5 cut(s)	88, 163, 177, 183, 316
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	168, 274
Hin1II	CATG	4 cut(s)	290, 340, 571, 771
Hin6I	GCGC	2 cut(s)	166, 272
HinP1I	GCGC	2 cut(s)	166, 272
HindIII	AAGCTT	1 cut(s)	543
HpaII	CCGG	5 cut(s)	88, 163, 177, 183, 316
HphI	GGTGA	2 cut(s)	455, 752
Hpy166II	GTNNAC	1 cut(s)	810
Hpy188III	TCNNGA	3 cut(s)	77, 419, 645
Hpy8I	GTNNAC	1 cut(s)	810
HpyAV	CCTTC	1 cut(s)	737
HpyCH4V	TGCA	5 cut(s)	173, 550, 604, 718, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 30, 562
HpyF3I	CTNAG	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	290, 340, 571, 771
HspAI	GCGC	2 cut(s)	166, 272
KflI	GGGWCCC	1 cut(s)	41
KroI	GCCGGC	2 cut(s)	162, 315
KroNI	GCCGGC	2 cut(s)	164, 317
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	445, 469, 476, 513
LmnI	GCTCC	3 cut(s)	73, 185, 415
Lsp1109I	GCAGC	4 cut(s)	39, 473, 512, 604
LweI	GCATC	2 cut(s)	384, 397
MalI	GATC	4 cut(s)	447, 471, 478, 515
MboI	GATC	4 cut(s)	445, 469, 476, 513
MboII	GAAGA	5 cut(s)	68, 366, 374, 506, 583
MflI	RGATCY	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	6 cut(s)	125, 206, 235, 261, 435, 748
MluNI	TGGCCA	1 cut(s)	635
MnlI	CCTC	7 cut(s)	46, 114, 131, 187, 394, 423, 766
Mox20I	TGGCCA	1 cut(s)	635
MroNI	GCCGGC	2 cut(s)	162, 315
MscI	TGGCCA	1 cut(s)	635
MslI	CAYNNNNRTG	3 cut(s)	253, 341, 420
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	3 cut(s)	30, 106, 503
MspI	CCGG	5 cut(s)	88, 163, 177, 183, 316
MspR9I	CCNGG	4 cut(s)	89, 177, 183, 731
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	3 cut(s)	24, 30, 562
NaeI	GCCGGC	2 cut(s)	164, 317
NciI	CCSGG	3 cut(s)	89, 177, 183
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	445, 469, 476, 513
NgoMIV	GCCGGC	2 cut(s)	162, 315
NlaIII	CATG	4 cut(s)	290, 340, 571, 771
NlaIV	GGNNCC	6 cut(s)	42, 43, 69, 100, 181, 187
NmeAIII	GCCGAG	2 cut(s)	44, 793
NspI	RCATGY	1 cut(s)	771
PasI	CCCWGGG	1 cut(s)	730
PdiI	GCCGGC	2 cut(s)	164, 317
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	26, 29, 32, 379, 488, 502, 619
Ple19I	CGATCG	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	6 cut(s)	42, 43, 69, 100, 181, 187
PspPI	GGNCC	5 cut(s)	41, 85, 179, 242, 313
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	513
PsyI	GACNNNGTC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	472
RsaI	GTAC	5 cut(s)	11, 110, 431, 527, 686
RsaNI	GTAC	5 cut(s)	10, 109, 430, 526, 685
RseI	CAYNNNNRTG	3 cut(s)	253, 341, 420
SatI	GCNGC	7 cut(s)	25, 28, 31, 378, 487, 501, 618
Sau3AI	GATC	4 cut(s)	445, 469, 476, 513
Sau96I	GGNCC	5 cut(s)	41, 85, 179, 242, 313
ScrFI	CCNGG	4 cut(s)	89, 177, 183, 731
SetI	ASST	8 cut(s)	87, 198, 325, 547, 619, 748, 809, 827
SfaNI	GCATC	2 cut(s)	384, 397
SinI	GGWCC	2 cut(s)	41, 85
SmiMI	CAYNNNNRTG	3 cut(s)	253, 341, 420
Sse9I	AATT	6 cut(s)	125, 206, 235, 261, 435, 748
SsiI	CCGC	6 cut(s)	18, 25, 30, 104, 377, 503
StyD4I	CCNGG	4 cut(s)	87, 175, 181, 729
TaqI	TCGA	1 cut(s)	392
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	6 cut(s)	125, 206, 235, 261, 435, 748
TatI	WGTACW	2 cut(s)	108, 684
TauI	GCSGC	3 cut(s)	27, 33, 380
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	4 cut(s)	27, 486, 500, 617
TspDTI	ATGAA	5 cut(s)	267, 293, 375, 584, 641
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	41, 85
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.