Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Forward (+)

38881425 .. 38906736

Gene Structure 25312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATGAGTACGATAGCGGTGGCCGCAGCGGCGATAAGGGTTCGGTAGCCGAGGAAGAAATCTCGGCTCCTATTCCCGACAAGGTCCAGGTTGGTGGTTCCCCGCTGTACAAAGTAGAGAGGAAATTGGGGAAAGGAGGCTTTGGACAAGTATATGTTGGCCGGCGCACCGCACCCGGCCCTGGAGCCATTGAGGTTGCCTTGAAATTGAGCATAGAAGCAGTAAAGGATGTAATTATGGCCCACCATATGAATGGCAAATTTACAATGCACTTGGTGGTAGTCATGGAGTTCCAAGAGTTCATTATAAGGGCCGGCAAGCTGACTACTATATCATGTTTGTGGGATGTCCGGAATAACAGCTCGCACACAATGTCAATTGAAATGGTTGCATGTATTGCCATTGAGGCAATTTCCATATTGGAGAAGATGCACTCTAGAGGATATGTGCATGGAGATGTGAAACATGTCGAGGCATTCTATCAATGGGAAGATATGAAGACCCAAATAGTGCGGCTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGGTCAAGACGCAATTTTTGGATTGTTTGGTGGAAGTGAGTCCTTTTTGGGATGTTGAAAATCACTTTGAGACACTTAAAAACATTTTGCATTTTGACCTCATTTTTCTGCATTTATGCTGCTACTATGATAATCGTGCTAGACCAACCAGGTGTGGGGTTTTGTCCTATGATCGAGATAATCGTTATTCTTTGCCTCCTCAAGTGGGAAGAAGTTGGGAAAATGAAAATCTCCATCAGAGTGTAGATTTCCGGGGTTTGACAAAAACCCAGCTGCACTTCCACGGTAGCTTCCCAACACGGGATGAATGGTATTCGATTCCACTCCGTAGCAAACTTGAGAACCTCAAGGTCGACCAAAAAATAAGCGGAATTGCGGAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

35.91

Weight (kDa)

6.4

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	912
AccIII	TCCGGA	1 cut(s)	351
AciI	CCGC	8 cut(s)	18, 25, 30, 104, 171, 514, 927, 935
AcoI	YGGCCR	2 cut(s)	22, 160
AcsI	RAATTY	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	11, 110
AfiI	CCNNNNNNNGG	4 cut(s)	182, 714, 764, 859
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	3 cut(s)	205, 383, 617
AjnI	CCWGG	3 cut(s)	87, 181, 707
AluBI	AGCT	4 cut(s)	322, 363, 832, 849
AluI	AGCT	4 cut(s)	322, 363, 832, 849
Alw26I	GTCTC	1 cut(s)	623
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	5 cut(s)	22, 160, 178, 240, 312
ApeKI	GCWGC	3 cut(s)	27, 678, 832
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	4 cut(s)	85, 179, 241, 312
AsuC2I	CCSGG	2 cut(s)	177, 812
AvaII	GGWCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	3 cut(s)	39, 665, 819
BccI	CCATC	2 cut(s)	553, 801
BciT130I	CCWGG	3 cut(s)	89, 183, 709
BcnI	CCSGG	2 cut(s)	177, 812
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	438, 699
BglI	GCCNNNNNGGC	2 cut(s)	30, 407
BisI	GCNGC	6 cut(s)	25, 28, 31, 515, 679, 833
BlsI	GCNGC	6 cut(s)	26, 29, 32, 516, 680, 834
Bme1390I	CCNGG	5 cut(s)	89, 177, 183, 709, 812
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	4 cut(s)	85, 179, 241, 312
BmiI	GGNNCC	3 cut(s)	69, 100, 187
BmrFI	CCNGG	5 cut(s)	89, 177, 183, 709, 812
BmsI	GCATC	3 cut(s)	420, 521, 534
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	3 cut(s)	744, 890, 917
BpuMI	CCSGG	2 cut(s)	177, 812
BsaJI	CCNNGG	4 cut(s)	51, 181, 811, 841
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 714, 764, 859
Bse118I	RCCGGY	2 cut(s)	162, 314
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	89, 183, 709
BseDI	CCNNGG	4 cut(s)	51, 181, 811, 841
BseGI	GGATG	5 cut(s)	10, 235, 352, 616, 868
BseLI	CCNNNNNNNGG	4 cut(s)	182, 714, 764, 859
BseRI	GAGGAG	2 cut(s)	539, 747
BseXI	GCAGC	3 cut(s)	39, 665, 819
BseYI	CCCAGC	1 cut(s)	828
BsgI	GTGCAG	1 cut(s)	818
BshFI	GGCC	5 cut(s)	24, 162, 180, 242, 314
BsiSI	CCGG	5 cut(s)	163, 177, 315, 352, 811
BslI	CCNNNNNNNGG	4 cut(s)	182, 714, 764, 859
BsmAI	GTCTC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	5 cut(s)	24, 162, 180, 242, 314
Bsp13I	TCCGGA	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	730
BspACI	CCGC	8 cut(s)	18, 25, 30, 104, 171, 514, 927, 935
BspANI	GGCC	5 cut(s)	24, 162, 180, 242, 314
BspEI	TCCGGA	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	69, 100, 187
BsrFI	RCCGGY	2 cut(s)	162, 314
BsrGI	TGTACA	1 cut(s)	108
BssAI	RCCGGY	2 cut(s)	162, 314
BssECI	CCNNGG	4 cut(s)	51, 181, 811, 841
BssMI	GATC	1 cut(s)	730
Bst2UI	CCWGG	3 cut(s)	89, 183, 709
Bst4CI	ACNGT	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	4 cut(s)	164, 316, 320, 365
BstDSI	CCRYGG	1 cut(s)	841
BstF5I	GGATG	5 cut(s)	10, 235, 352, 616, 868
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 30, 398, 407
BstNI	CCWGG	3 cut(s)	89, 183, 709
BstNSI	RCATGY	2 cut(s)	396, 470
BstSCI	CCNGG	5 cut(s)	87, 175, 181, 707, 810
BstV1I	GCAGC	3 cut(s)	39, 665, 819
BstV2I	GAAGAC	1 cut(s)	506
BstXI	CCANNNNNNTGG	2 cut(s)	95, 254
BsuRI	GGCC	5 cut(s)	24, 162, 180, 242, 314
BtgI	CCRYGG	1 cut(s)	841
BtsCI	GGATG	5 cut(s)	10, 235, 352, 616, 868
Cac8I	GCNNGC	4 cut(s)	164, 316, 320, 365
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	2 cut(s)	162, 314
Cfr13I	GGNCC	4 cut(s)	85, 179, 241, 312
CseI	GACGC	1 cut(s)	577
CsiI	ACCWGGT	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	10, 109
CviAII	CATG	5 cut(s)	286, 336, 393, 452, 467
CviQI	GTAC	2 cut(s)	10, 109
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	22, 160
Eco47I	GGWCC	1 cut(s)	85
EcoRII	CCWGG	3 cut(s)	87, 181, 707
FaeI	CATG	5 cut(s)	289, 339, 396, 455, 470
FatI	CATG	5 cut(s)	285, 335, 392, 451, 466
FauI	CCCGC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	6 cut(s)	25, 28, 31, 515, 679, 833
FokI	GGATG	5 cut(s)	17, 242, 359, 623, 875
Fsp4HI	GCNGC	6 cut(s)	25, 28, 31, 515, 679, 833
FspBI	CTAG	2 cut(s)	438, 699
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	25, 28, 31, 515, 679, 833
GsaI	CCCAGC	1 cut(s)	832
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	24, 162, 180, 242, 314
HapII	CCGG	5 cut(s)	163, 177, 315, 352, 811
HgaI	GACGC	1 cut(s)	577
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	289, 339, 396, 455, 470
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	2 cut(s)	598, 877
HpaII	CCGG	5 cut(s)	163, 177, 315, 352, 811
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	6 cut(s)	77, 352, 438, 556, 565, 734
Hpy8I	GTNNAC	1 cut(s)	913
HpyCH4III	ACNGT	1 cut(s)	845
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	7 cut(s)	271, 392, 433, 451, 649, 670, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 30, 398, 407
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	5 cut(s)	289, 339, 396, 455, 470
HspAI	GCGC	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	351
KroI	GCCGGC	2 cut(s)	162, 314
KroNI	GCCGGC	2 cut(s)	164, 316
Kzo9I	GATC	1 cut(s)	730
LmnI	GCTCC	3 cut(s)	73, 185, 552
Lsp1109I	GCAGC	3 cut(s)	39, 665, 819
LweI	GCATC	3 cut(s)	420, 521, 534
MabI	ACCWGGT	1 cut(s)	707
MaeI	CTAG	2 cut(s)	438, 699
MaeII	ACGT	1 cut(s)	941
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MboII	GAAGA	5 cut(s)	68, 439, 503, 511, 780
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	8 cut(s)	125, 206, 234, 260, 378, 411, 572, 930
MlyI	GAGTC	1 cut(s)	607
MroI	TCCGGA	1 cut(s)	351
MroNI	GCCGGC	2 cut(s)	162, 314
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	5 cut(s)	252, 340, 456, 557, 798
MspA1I	CMGCKG	3 cut(s)	30, 106, 832
MspI	CCGG	5 cut(s)	163, 177, 315, 352, 811
MspR9I	CCNGG	5 cut(s)	89, 177, 183, 709, 812
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	3 cut(s)	89, 183, 709
MwoI	GCNNNNNNNGC	4 cut(s)	24, 30, 398, 407
NaeI	GCCGGC	2 cut(s)	164, 316
NciI	CCSGG	2 cut(s)	177, 812
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	1 cut(s)	730
NgoMIV	GCCGGC	2 cut(s)	162, 314
NlaIII	CATG	5 cut(s)	289, 339, 396, 455, 470
NlaIV	GGNNCC	3 cut(s)	69, 100, 187
NmeAIII	GCCGAG	2 cut(s)	44, 76
NspI	RCATGY	2 cut(s)	396, 470
PciI	ACATGT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PctI	GAATGC	1 cut(s)	476
PdiI	GCCGGC	2 cut(s)	164, 316
PfeI	GAWTC	1 cut(s)	877
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	26, 29, 32, 516, 680, 834
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PscI	ACATGT	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	87, 181, 707
PspFI	CCCAGC	1 cut(s)	828
PspGI	CCWGG	3 cut(s)	87, 181, 707
PspN4I	GGNNCC	3 cut(s)	69, 100, 187
PspPI	GGNCC	4 cut(s)	85, 179, 241, 312
PsyI	GACNNNGTC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	2 cut(s)	11, 110
RsaNI	GTAC	2 cut(s)	10, 109
RseI	CAYNNNNRTG	5 cut(s)	252, 340, 456, 557, 798
SalI	GTCGAC	1 cut(s)	911
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	6 cut(s)	25, 28, 31, 515, 679, 833
Sau3AI	GATC	1 cut(s)	730
Sau96I	GGNCC	4 cut(s)	85, 179, 241, 312
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	5 cut(s)	89, 177, 183, 709, 812
SexAI	ACCWGGT	1 cut(s)	707
SfaNI	GCATC	3 cut(s)	420, 521, 534
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	5 cut(s)	252, 340, 456, 557, 798
SmlI	CTYRAG	3 cut(s)	759, 896, 905
SmoI	CTYRAG	3 cut(s)	759, 896, 905
Sse9I	AATT	8 cut(s)	125, 206, 234, 260, 378, 411, 572, 930
SsiI	CCGC	8 cut(s)	18, 25, 30, 104, 171, 514, 927, 935
SspMI	CTAG	2 cut(s)	438, 699
StyD4I	CCNGG	5 cut(s)	87, 175, 181, 707, 810
TaaI	ACNGT	1 cut(s)	845
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	5 cut(s)	471, 529, 733, 875, 912
TasI	AATT	8 cut(s)	125, 206, 234, 260, 378, 411, 572, 930
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	3 cut(s)	27, 33, 517
TfiI	GAWTC	1 cut(s)	877
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	3 cut(s)	27, 678, 832
TspDTI	ATGAA	5 cut(s)	266, 292, 512, 798, 879
TspGWI	ACGGA	1 cut(s)	875
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	437
XceI	RCATGY	2 cut(s)	396, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	2 cut(s)	438, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.