Rroxscaffold_4G00324730

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005565
Physical Location & Seq
Forward (+)
56349393 .. 56378168
28776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324730.1

Sequence Viewer

Length: 381 bp
ATGGCCGATCCTTCCCACCATGCTCGACAAGGATTGTTTGGTGGAAGTGAGTCCTTTTTGGATGTTGAAAGTGCTCGATTGGAAGTTGAGTCCTTTTTGGATGTTGAAAGTGCTCGATTGGAATATCATAGTCATAAAGCCTCTGTCTCACATCTTTGGCAAACCCGCGTGCATGCGAAGACAAATCCAAGGAATCAAATTAGCTGGGAGAAATTAGGATGCCCTATTCCGTTGGGTACAATCCACACAGTGCGAGCTCTGCTCAAGCCTACATTACGGGACTTGGCTAATGTCTATGATCATCTTTACAATATGGAGAGCGATAGCTTTTGGAAATACGAATCAGTTTTTTACATCTCATCGAGACCCAACTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

126

Amino Acids

14.49

Weight (kDa)

6.43

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 2 cut(s) 68, 107
AluBI AGCT 3 cut(s) 204, 257, 327
AluI AGCT 3 cut(s) 204, 257, 327
Alw21I GWGCWC 3 cut(s) 76, 115, 259
Alw26I GTCTC 2 cut(s) 151, 358
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 3
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 3 cut(s) 76, 115, 259
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 151, 358
BmsI GCATC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BpuEI CTTGAG 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 67, 106, 224
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 3 cut(s) 76, 115, 259
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 151, 358
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 76, 115, 259
Bsp143I GATC 2 cut(s) 7, 298
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 2 cut(s) 7, 298
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 250
BstC8I GCNNGC 3 cut(s) 170, 174, 255
BstF5I GGATG 3 cut(s) 67, 106, 224
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 2 cut(s) 10, 301
BstMAI GTCTC 2 cut(s) 151, 358
BstMBI GATC 2 cut(s) 7, 298
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 176
BstUI CGCG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 67, 106, 224
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 170, 174, 255
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 20, 173
CviJI RGCY 7 cut(s) 5, 140, 204, 257, 268, 287, 327
CviKI_1 RGCY 7 cut(s) 5, 140, 204, 257, 268, 287, 327
CviQI GTAC 1 cut(s) 237
DpnI GATC 2 cut(s) 9, 300
DpnII GATC 2 cut(s) 7, 298
DraIII CACNNNGTG 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 23, 176
FaiI YATR 8 cut(s) 21, 129, 135, 174, 297, 314, 375, 379
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 19, 172
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 298
FokI GGATG 3 cut(s) 74, 113, 231
FriOI GRGCYC 1 cut(s) 259
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 176
HinfI GANTC 4 cut(s) 50, 89, 193, 341
Hpy188III TCNNGA 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 172, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
Hsp92II CATG 2 cut(s) 23, 176
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 7, 298
LpnPI CCDG 1 cut(s) 190
LweI GCATC 1 cut(s) 209
MalI GATC 2 cut(s) 9, 300
MboI GATC 2 cut(s) 7, 298
MboII GAAGA 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 76, 115, 259
MluCI AATT 2 cut(s) 198, 212
MlyI GAGTC 2 cut(s) 59, 98
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 379
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 2 cut(s) 7, 298
NlaIII CATG 2 cut(s) 23, 176
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 193, 341
PleI GAGTC 2 cut(s) 58, 97
PpsI GAGTC 2 cut(s) 58, 97
Psp124BI GAGCTC 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 204
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SacI GAGCTC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 7, 298
SchI GAGTC 2 cut(s) 59, 98
SduI GDGCHC 3 cut(s) 76, 115, 259
SetI ASST 3 cut(s) 206, 259, 329
SfaNI GCATC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 176
Sse9I AATT 2 cut(s) 198, 212
SsiI CCGC 1 cut(s) 166
SstI GAGCTC 1 cut(s) 259
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 4 cut(s) 25, 76, 115, 362
TasI AATT 2 cut(s) 198, 212
TfiI GAWTC 2 cut(s) 193, 341
TscAI CASTG 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 255
XceI RCATGY 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.