Rroxscaffold_3G00220380

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005565
Physical Location & Seq
Forward (+)
2591564 .. 2593592
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220380.1

Sequence Viewer

Length: 705 bp
ATGGTAGAGTTTCCGCCGGGCACGGTGGTAGCAGCGAAGGTAGAGAAGAGGAAGGATGGTTGTGGCAGTTCAAGTCCGAAATGGGAGCTGGAGGGAAGCAATGATCATGCCGAAATCGTACGCCAACCATTGATCTTCGGGGCAAAGCGCAAGGAGACCCGGCCTTACGAGCCGAGCTCATCCCGAAAGTTCGTTATGCATGATAGTGAGCTTAAAAAGAAGTTTTATAAGCGGTTTGGGACGAAGGTGTTTTATCAGTCCAACTACAATTCGTACCAATCTTCATCGGCTGATTGGAGGGCTACATTGGGCTGTTTTGTGGCTCTTGATCCACCCAAACCAGAAGAAGTACCCTCGGTTTGTAGTTTTGGCAAGGTTGAAAAATTAATCGAGAAAAGTGGGAGGCTCCTGGATGCCGTGCTGCTAGTCGGTGACATTACTCCCGCAATTTGTACCATTGAAGGATTTGAGGACGAAGAGGTCCTGAGTTCGACGGTTAAGGATAACCGTAGTGTTTGTGATACGAGGACGAGTATGTCCAAAGATTGGGGGTTACGAGAGGTAACCGGGGATGTTGATCCGAAGGCCGAGCGCCCGAAGATTGGGGGCCGCGAGGCCGAGCGCCCGAAGATTGGGGGTCTGAGAGTTAACACGGGGATATTGATACGATGGCCGAGAGCACGGAGATCGGGGGTTACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

234

Amino Acids

26.13

Weight (kDa)

9.22

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AasI GACNNNNNNGTC 2 cut(s) 479, 535
AccB7I CCANNNNNTGG 1 cut(s) 546
AccII CGCG 1 cut(s) 612
AciI CCGC 4 cut(s) 14, 232, 444, 610
AclWI GGATC 2 cut(s) 323, 572
AcoI YGGCCR 1 cut(s) 671
AfaI GTAC 4 cut(s) 120, 275, 351, 454
AfiI CCNNNNNNNGG 3 cut(s) 546, 602, 632
AgsI TTSAA 3 cut(s) 72, 380, 461
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 3 cut(s) 88, 177, 211
AluI AGCT 3 cut(s) 88, 177, 211
Alw21I GWGCWC 2 cut(s) 179, 682
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 323, 572
AoxI GGCC 5 cut(s) 161, 585, 607, 615, 671
ApeKI GCWGC 2 cut(s) 32, 421
AseI ATTAAT 1 cut(s) 386
AspLEI GCGC 3 cut(s) 150, 594, 624
AspS9I GGNCC 2 cut(s) 481, 607
AsuC2I CCSGG 3 cut(s) 18, 160, 568
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 179, 682
BbvI GCAGC 2 cut(s) 44, 408
BccI CCATC 2 cut(s) 50, 663
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 3 cut(s) 18, 160, 568
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 425
BfoI RGCGCY 2 cut(s) 595, 625
BisI GCNGC 3 cut(s) 33, 422, 610
BlsI GCNGC 3 cut(s) 34, 423, 611
Bme1390I CCNGG 4 cut(s) 18, 160, 410, 568
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 481, 607
BmiI GGNNCC 2 cut(s) 407, 608
BmrFI CCNGG 4 cut(s) 18, 160, 410, 568
BmsI GCATC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 3 cut(s) 18, 160, 568
BsaBI GATNNNNATC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 354, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 546, 602, 632
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 354, 567
BseGI GGATG 4 cut(s) 61, 179, 418, 577
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 3 cut(s) 546, 602, 632
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 476, 632
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 2 cut(s) 44, 408
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 5 cut(s) 163, 587, 609, 617, 673
BsiHKAI GWGCWC 2 cut(s) 179, 682
BsiSI CCGG 3 cut(s) 17, 160, 567
BsiWI CGTACG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 546, 602, 632
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 5 cut(s) 163, 587, 609, 617, 673
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 23, 179, 682
Bsp143I GATC 5 cut(s) 103, 132, 328, 577, 686
BspACI CCGC 4 cut(s) 14, 232, 444, 610
BspANI GGCC 5 cut(s) 163, 587, 609, 617, 673
BspCNI CTCAG 2 cut(s) 477, 633
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 407, 608
BspPI GGATC 2 cut(s) 323, 572
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 354, 567
BssMI GATC 5 cut(s) 103, 132, 328, 577, 686
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 3 cut(s) 25, 496, 509
Bst6I CTCTTC 2 cut(s) 41, 471
BstDEI CTNAG 2 cut(s) 485, 641
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 4 cut(s) 61, 179, 418, 577
BstFNI CGCG 1 cut(s) 612
BstH2I RGCGCY 2 cut(s) 595, 625
BstHHI GCGC 3 cut(s) 150, 594, 624
BstKTI GATC 5 cut(s) 106, 135, 331, 580, 689
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 5 cut(s) 103, 132, 328, 577, 686
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 16, 158, 408, 566
BstSLI GKGCMC 1 cut(s) 23
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 44, 408
BsuRI GGCC 5 cut(s) 163, 587, 609, 617, 673
BtsCI GGATG 4 cut(s) 61, 179, 418, 577
CfoI GCGC 3 cut(s) 150, 594, 624
Cfr13I GGNCC 2 cut(s) 481, 607
Csp6I GTAC 4 cut(s) 119, 274, 350, 453
CviAII CATG 2 cut(s) 107, 200
CviQI GTAC 4 cut(s) 119, 274, 350, 453
DdeI CTNAG 2 cut(s) 485, 641
DpnI GATC 5 cut(s) 105, 134, 330, 579, 688
DpnII GATC 5 cut(s) 103, 132, 328, 577, 686
DrdI GACNNNNNNGTC 2 cut(s) 479, 535
DseDI GACNNNNNNGTC 2 cut(s) 479, 535
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 41, 471
EarI CTCTTC 2 cut(s) 41, 471
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 481
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 2 cut(s) 110, 203
FaiI YATR 5 cut(s) 108, 197, 201, 228, 536
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 106, 199
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 33, 422, 610
FokI GGATG 4 cut(s) 68, 166, 425, 584
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 33, 422, 610
FspBI CTAG 1 cut(s) 425
GlaI GCGC 3 cut(s) 149, 593, 623
GluI GCNGC 3 cut(s) 33, 422, 610
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 2 cut(s) 595, 625
HaeIII GGCC 5 cut(s) 163, 587, 609, 617, 673
HapII CCGG 3 cut(s) 17, 160, 567
HhaI GCGC 3 cut(s) 150, 594, 624
Hin1II CATG 2 cut(s) 110, 203
Hin6I GCGC 3 cut(s) 148, 592, 622
HinP1I GCGC 3 cut(s) 148, 592, 622
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HpaI GTTAAC 1 cut(s) 649
HpaII CCGG 3 cut(s) 17, 160, 567
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 3 cut(s) 78, 582, 642
Hpy188III TCNNGA 4 cut(s) 183, 326, 391, 484
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 5 cut(s) 31, 46, 238, 455, 577
HpyCH4III ACNGT 3 cut(s) 25, 496, 509
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 485, 641
Hsp92II CATG 2 cut(s) 110, 203
HspAI GCGC 3 cut(s) 148, 592, 622
Ksp22I TGATCA 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 5 cut(s) 103, 132, 328, 577, 686
LmnI GCTCC 2 cut(s) 85, 411
LpnPI CCDG 8 cut(s) 30, 74, 173, 354, 395, 422, 497, 580
Lsp1109I GCAGC 2 cut(s) 44, 408
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 4 cut(s) 431, 552, 562, 694
MalI GATC 5 cut(s) 105, 134, 330, 579, 688
MboI GATC 5 cut(s) 103, 132, 328, 577, 686
MboII GAAGA 7 cut(s) 58, 127, 273, 356, 488, 610, 640
MhlI GDGCHC 3 cut(s) 23, 179, 682
MluCI AATT 3 cut(s) 268, 383, 447
MmeI TCCRAC 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 4 cut(s) 213, 386, 498, 648
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 3 cut(s) 17, 160, 567
MspR9I CCNGG 4 cut(s) 18, 160, 410, 568
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 3 cut(s) 18, 160, 568
NdeII GATC 5 cut(s) 103, 132, 328, 577, 686
NlaIII CATG 2 cut(s) 110, 203
NlaIV GGNNCC 2 cut(s) 407, 608
NmeAIII GCCGAG 4 cut(s) 198, 613, 643, 699
NmuCI GTSAC 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 201
Pfl23II CGTACG 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 546
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 3 cut(s) 34, 423, 611
PpuMI RGGWCCY 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 386
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 408
PspEI GGTNACC 1 cut(s) 562
PspGI CCWGG 1 cut(s) 408
PspLI CGTACG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 407, 608
PspPI GGNCC 2 cut(s) 481, 607
PspPPI RGGWCCY 1 cut(s) 481
RsaI GTAC 4 cut(s) 120, 275, 351, 454
RsaNI GTAC 4 cut(s) 119, 274, 350, 453
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 213, 386, 498, 648
SatI GCNGC 3 cut(s) 33, 422, 610
Sau3AI GATC 5 cut(s) 103, 132, 328, 577, 686
Sau96I GGNCC 2 cut(s) 481, 607
ScrFI CCNGG 4 cut(s) 18, 160, 410, 568
SduI GDGCHC 3 cut(s) 23, 179, 682
SetI ASST 8 cut(s) 42, 90, 179, 213, 249, 378, 483, 564
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 268, 383, 447
SsiI CCGC 4 cut(s) 14, 232, 444, 610
SspMI CTAG 1 cut(s) 425
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 4 cut(s) 16, 158, 408, 566
TaaI ACNGT 3 cut(s) 25, 496, 509
TaqI TCGA 2 cut(s) 390, 491
TasI AATT 3 cut(s) 268, 383, 447
TauI GCSGC 1 cut(s) 612
Tru1I TTAA 4 cut(s) 213, 386, 498, 648
Tru9I TTAA 4 cut(s) 213, 386, 498, 648
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 32, 421
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 697
Van91I CCANNNNNTGG 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 386
XspI CTAG 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.