Rroxscaffold_5G00336100

D-glycerate 3-kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
3812329 .. 3813805
1477 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00336100.1

Sequence Viewer

Length: 312 bp
ATGGTGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCAGGAGTATCGAGCCATGATCTTCCATTCTCTGTGGAGACACCGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGACAAGTCTGCTTACAATGGAAAGGGGGACAGAGCTGATCCTTTGACATGGCCCGAGGTGGAAGGGCCGCTTCTTGTTGGATGCTTGGCTTCAAACCCGTTCTGTGGAAGTTGTCAAAGCGGTCGATCCACAGGTGACTTATACTTCTTTAATGATTTTAGGAATGTTTAG

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

4.78

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 209, 261
AclWI GGATC 3 cut(s) 25, 173, 261
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 35, 234
AluBI AGCT 2 cut(s) 130, 176
AluI AGCT 2 cut(s) 130, 176
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 3 cut(s) 25, 173, 261
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 191, 206
ApeKI GCWGC 2 cut(s) 27, 41
AspS9I GGNCC 2 cut(s) 192, 206
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 14, 53
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcoDI GTCTC 1 cut(s) 74
BisI GCNGC 3 cut(s) 28, 42, 209
BlsI GCNGC 3 cut(s) 29, 43, 210
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 192, 206
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 14, 53
Bsh1285I CGRYCG 2 cut(s) 13, 265
BshFI GGCC 2 cut(s) 193, 208
BsiEI CGRYCG 2 cut(s) 13, 265
BsiHKCI CYCGRG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 193, 208
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 5 cut(s) 10, 17, 61, 178, 266
BspACI CCGC 2 cut(s) 209, 261
BspANI GGCC 2 cut(s) 193, 208
BspPI GGATC 3 cut(s) 25, 173, 261
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 5 cut(s) 10, 17, 61, 178, 266
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 5 cut(s) 13, 20, 64, 181, 269
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 5 cut(s) 10, 17, 61, 178, 266
BstMCI CGRYCG 2 cut(s) 13, 265
BstV1I GCAGC 2 cut(s) 14, 53
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 193, 208
BtsCI GGATG 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 192, 206
CseI GACGC 1 cut(s) 47
CviAII CATG 2 cut(s) 59, 189
CviJI RGCY 7 cut(s) 27, 57, 130, 176, 193, 208, 230
CviKI_1 RGCY 7 cut(s) 27, 57, 130, 176, 193, 208, 230
DdeI CTNAG 1 cut(s) 95
DpnI GATC 5 cut(s) 12, 19, 63, 180, 268
DpnII GATC 5 cut(s) 10, 17, 61, 178, 266
Eco88I CYCGRG 1 cut(s) 194
FaeI CATG 2 cut(s) 62, 192
FaiI YATR 5 cut(s) 60, 119, 141, 190, 283
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 58, 188
Fnu4HI GCNGC 3 cut(s) 28, 42, 209
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 28, 42, 209
GluI GCNGC 3 cut(s) 28, 42, 209
HaeIII GGCC 2 cut(s) 193, 208
HgaI GACGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 62, 192
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 107, 197
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 62, 192
Kzo9I GATC 5 cut(s) 10, 17, 61, 178, 266
LpnPI CCDG 2 cut(s) 30, 258
Lsp1109I GCAGC 2 cut(s) 14, 53
LweI GCATC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 275
MalI GATC 5 cut(s) 12, 19, 63, 180, 268
MboI GATC 5 cut(s) 10, 17, 61, 178, 266
MboII GAAGA 3 cut(s) 47, 56, 133
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 190
MseI TTAA 1 cut(s) 291
NdeII GATC 5 cut(s) 10, 17, 61, 178, 266
NlaIII CATG 2 cut(s) 62, 192
NmuCI GTSAC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 29, 43, 210
Ple19I CGATCG 1 cut(s) 13
PspPI GGNCC 2 cut(s) 192, 206
PvuI CGATCG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 28, 42, 209
Sau3AI GATC 5 cut(s) 10, 17, 61, 178, 266
Sau96I GGNCC 2 cut(s) 192, 206
SetI ASST 5 cut(s) 118, 132, 178, 201, 277
SfaNI GCATC 1 cut(s) 212
Sse9I AATT 1 cut(s) 100
SsiI CCGC 2 cut(s) 209, 261
TaqI TCGA 2 cut(s) 53, 265
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 27, 41
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 134, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.