Rroxscaffold_3G00220370

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005565
Physical Location & Seq
Forward (+)
2584354 .. 2585995
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220370.1

Sequence Viewer

Length: 693 bp
ATGCTTGATCAAGACCGTAGCTTTACGGATTGCTACGGTAGCTTAGATCGTACTCTAGAGCTTAGTTGCAGTTTGTGGGTTCTTTTCGGTGACGAAGTCCGGCTTGAAACGGTGCTGAACTGCTCGGCTTTTGGGGAGATAGATGGTAGAGTTTCCGCCGGGCACGGTGGTAGCGGCGAAGGTAGAGAAGAGGAAGGATGGTTGTGGCGAGTTCAAGTCCGAAATGGGAGCTGGAGGGAAGCAATGATCATGCCGAAATCGGTACGCCAACCATTGATCTTCGGGGCAAAGCGCAAGGAGACCCGGCCTTACGAGCCGAGCTCATCCCGAAAGTTCGTTATGCATGATAGTGAGCTTAAAAAGAAGTTTTATAAGCGGTTTGGGACGAAGGTGTTTTATCGGTCCAACTACAATTCGTACCAATCTTCATCAGCTGATTGGAGGGCTACATTGGGCTGTTTTGTGGCTCTTGATCCACCCAAACCAGAAGAAGTACCCTCGGTTTGTAGTTTTGGCAAGGTTGAAAAATTAATCGAGAAAAGTGGGAGGCTCCTGGATGCCGTGTCGCTAGTCGGTGACATTACTCCTGCAATTTGTACCATTGAAGGTGATCAATGGTTTGAGATGATGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCGGGATTAGAGTTATTTATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

230

Amino Acids

26.01

Weight (kDa)

5.44

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AciI CCGC 4 cut(s) 156, 174, 376, 668
AclWI GGATC 2 cut(s) 467, 649
AfaI GTAC 5 cut(s) 52, 264, 419, 495, 598
AgsI TTSAA 5 cut(s) 107, 215, 524, 605, 659
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 7 cut(s) 21, 42, 61, 231, 321, 355, 434
AluI AGCT 7 cut(s) 21, 42, 61, 231, 321, 355, 434
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 2 cut(s) 467, 649
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 651, 665
AseI ATTAAT 1 cut(s) 530
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 402
AsuC2I CCSGG 2 cut(s) 160, 304
AsuHPI GGTGA 3 cut(s) 101, 587, 620
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 638, 677
BccI CCATC 3 cut(s) 137, 192, 622
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 3 cut(s) 7, 246, 610
BcnI CCSGG 2 cut(s) 160, 304
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 2 cut(s) 56, 569
BisI GCNGC 3 cut(s) 175, 652, 666
BlsI GCNGC 3 cut(s) 176, 653, 667
Bme1390I CCNGG 3 cut(s) 160, 304, 554
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 551
BmrFI CCNGG 3 cut(s) 160, 304, 554
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 666
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 160, 304
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 3 cut(s) 203, 323, 562
BseMI GCAATG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 2 cut(s) 638, 677
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 3 cut(s) 100, 159, 304
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 165, 323
Bsp143I GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
BspACI CCGC 4 cut(s) 156, 174, 376, 668
BspANI GGCC 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 551
BspPI GGATC 2 cut(s) 467, 649
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 4 cut(s) 17, 38, 112, 167
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 43, 62
BstF5I GGATG 3 cut(s) 203, 323, 562
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 8 cut(s) 10, 49, 249, 279, 475, 613, 637, 644
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 39, 313
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 158, 302, 552
BstSLI GKGCMC 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 638, 677
BstV2I GAAGAC 1 cut(s) 666
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 203, 323, 562
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 402
CseI GACGC 1 cut(s) 671
Csp6I GTAC 5 cut(s) 51, 263, 418, 494, 597
CviAII CATG 2 cut(s) 250, 344
CviQI GTAC 5 cut(s) 51, 263, 418, 494, 597
DdeI CTNAG 2 cut(s) 43, 62
DpnI GATC 8 cut(s) 9, 48, 248, 278, 474, 612, 636, 643
DpnII GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 2 cut(s) 253, 347
FaiI YATR 5 cut(s) 251, 341, 345, 372, 686
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 249, 343
FauI CCCGC 1 cut(s) 661
FbaI TGATCA 3 cut(s) 7, 246, 610
Fnu4HI GCNGC 3 cut(s) 175, 652, 666
FokI GGATG 3 cut(s) 210, 310, 569
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 175, 652, 666
FspBI CTAG 2 cut(s) 56, 569
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 175, 652, 666
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 1 cut(s) 307
HapII CCGG 3 cut(s) 100, 159, 304
HgaI GACGC 1 cut(s) 671
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 253, 347
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HpaII CCGG 3 cut(s) 100, 159, 304
HphI GGTGA 3 cut(s) 101, 587, 620
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 5 cut(s) 11, 56, 327, 470, 535
HpyAV CCTTC 4 cut(s) 173, 188, 382, 599
HpyCH4III ACNGT 4 cut(s) 17, 38, 112, 167
HpyCH4V TGCA 3 cut(s) 69, 343, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 313
HpyF3I CTNAG 2 cut(s) 43, 62
Hsp92II CATG 2 cut(s) 253, 347
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 3 cut(s) 7, 246, 610
Kzo9I GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
LmnI GCTCC 2 cut(s) 228, 555
LpnPI CCDG 8 cut(s) 113, 172, 217, 317, 498, 539, 566, 600
Lsp1109I GCAGC 2 cut(s) 638, 677
LweI GCATC 1 cut(s) 547
MaeI CTAG 2 cut(s) 56, 569
MaeIII GTNAC 2 cut(s) 89, 575
MalI GATC 8 cut(s) 9, 48, 248, 278, 474, 612, 636, 643
MboI GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
MboII GAAGA 5 cut(s) 200, 271, 417, 500, 671
MhlI GDGCHC 2 cut(s) 165, 323
MluCI AATT 3 cut(s) 412, 527, 591
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 5 cut(s) 184, 228, 435, 508, 540
Mph1103I ATGCAT 1 cut(s) 345
MseI TTAA 2 cut(s) 357, 530
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 434, 668
MspI CCGG 3 cut(s) 100, 159, 304
MspR9I CCNGG 3 cut(s) 160, 304, 554
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 39, 313
NciI CCSGG 2 cut(s) 160, 304
NdeII GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
NlaIII CATG 2 cut(s) 253, 347
NlaIV GGNNCC 1 cut(s) 551
NmeAIII GCCGAG 2 cut(s) 104, 342
NmuCI GTSAC 2 cut(s) 89, 575
NsiI ATGCAT 1 cut(s) 345
PflFI GACNNNGTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 3 cut(s) 176, 653, 667
Ple19I CGATCG 1 cut(s) 637
PshBI ATTAAT 1 cut(s) 530
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 551
PspPI GGNCC 1 cut(s) 402
PsyI GACNNNGTC 1 cut(s) 95
PvuI CGATCG 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 5 cut(s) 52, 264, 419, 495, 598
RsaNI GTAC 5 cut(s) 51, 263, 418, 494, 597
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 357, 530
SatI GCNGC 3 cut(s) 175, 652, 666
Sau3AI GATC 8 cut(s) 7, 46, 246, 276, 472, 610, 634, 641
Sau96I GGNCC 1 cut(s) 402
ScrFI CCNGG 3 cut(s) 160, 304, 554
SduI GDGCHC 2 cut(s) 165, 323
SfaNI GCATC 1 cut(s) 547
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 3 cut(s) 412, 527, 591
SsiI CCGC 4 cut(s) 156, 174, 376, 668
SspMI CTAG 2 cut(s) 56, 569
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 158, 302, 552
TaaI ACNGT 4 cut(s) 17, 38, 112, 167
TaqI TCGA 1 cut(s) 534
TaqII GACCGA 1 cut(s) 390
TasI AATT 3 cut(s) 412, 527, 591
TauI GCSGC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 357, 530
Tru9I TTAA 2 cut(s) 357, 530
TseFI GTSAC 2 cut(s) 89, 575
TseI GCWGC 2 cut(s) 651, 665
Tsp45I GTSAC 2 cut(s) 89, 575
TspDTI ATGAA 1 cut(s) 417
TspGWI ACGGA 1 cut(s) 41
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 402
VspI ATTAAT 1 cut(s) 530
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 569
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.