Rroxscaffold_1G00025900

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005565
Physical Location & Seq
Forward (+)
32513064 .. 32527464
14401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025900.1

Sequence Viewer

Length: 594 bp
ATGAAGGTGATGATGGAAACATCGGTTCGGAGTATCAAGGTGCCCTCTCCGGGAGTGACGGACGGGATTCCTTTACGCTATGCGATTTATATCCCTACGAGTTTCAGCCTTGCGGAAGGAATATGTGAACTTTGTGTCCACTATGGTCCGATAGGAGAGGATTTGGGAAAAGACTCGAATGTGTACGCTTGGAATTGGACAGAATGGTATCAAGCTGTGCAGAACCTTCACGGTGGCGTAGCTAAGTCTTCTGCCAATCCCATTGTCGTGGAGGAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAGGGATTTGGCAAGGTTGGGAAATTAATCGAGAAAAGTGGGAGGCTCTGGATGCTGTGTGGTTAGTCGGTAGCATTGCTCCTGCAAATTATACCATTGAAGCGTGGGCATGTATTAATGAAAGCAGCTCTTGCTTCGGTGGTTTGGAGCAAAACATTCGTGGAGAAGATTACAAGCACAAGAAGGAGTACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAACACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

197

Amino Acids

22.1

Weight (kDa)

5.86

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 592
AfaI GTAC 2 cut(s) 185, 494
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 404, 515, 525
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 4 cut(s) 215, 242, 296, 432
AluI AGCT 4 cut(s) 215, 242, 296, 432
AlwI GGATC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 429
AseI ATTAAT 2 cut(s) 330, 420
Asp700I GAANNNNTTC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 441
BccI CCATC 1 cut(s) 7
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BcnI CCSGG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 430
BlsI GCNGC 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 89
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 552, 584
BspACI CCGC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 592
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 378
BssMI GATC 2 cut(s) 552, 584
Bst4CI ACNGT 2 cut(s) 233, 304
BstAPI GCANNNNNTGC 2 cut(s) 283, 435
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 555, 587
BstMBI GATC 2 cut(s) 552, 584
BstMWI GCNNNNNNNGC 3 cut(s) 283, 356, 435
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 184, 493
CviAII CATG 1 cut(s) 414
CviJI RGCY 6 cut(s) 108, 215, 242, 296, 350, 432
CviKI_1 RGCY 6 cut(s) 108, 215, 242, 296, 350, 432
CviQI GTAC 2 cut(s) 184, 493
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 554, 586
DpnII GATC 2 cut(s) 552, 584
Eco47I GGWCC 1 cut(s) 146
FaeI CATG 1 cut(s) 417
FaiI YATR 6 cut(s) 81, 90, 124, 144, 396, 415
FalI AAGNNNNNCTT 4 cut(s) 418, 450, 491, 523
FatI CATG 1 cut(s) 413
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 430
GluI GCNGC 1 cut(s) 430
HapII CCGG 1 cut(s) 50
Hin1II CATG 1 cut(s) 417
HinfI GANTC 2 cut(s) 67, 173
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 128, 139, 184, 578
Hpy188I TCNGA 3 cut(s) 30, 150, 589
Hpy188III TCNNGA 2 cut(s) 335, 353
Hpy8I GTNNAC 4 cut(s) 128, 139, 184, 578
HpyAV CCTTC 4 cut(s) 110, 236, 481, 493
HpyCH4III ACNGT 2 cut(s) 233, 304
HpyCH4V TGCA 3 cut(s) 220, 286, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 356, 435
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 1 cut(s) 417
Kzo9I GATC 2 cut(s) 552, 584
LmnI GCTCC 3 cut(s) 274, 388, 451
LpnPI CCDG 4 cut(s) 63, 282, 338, 399
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 554, 586
MboI GATC 2 cut(s) 552, 584
MboII GAAGA 2 cut(s) 240, 482
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 5 cut(s) 193, 278, 327, 391, 510
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 6 cut(s) 55, 151, 265, 340, 525, 555
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 4 cut(s) 330, 420, 509, 592
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 283, 356, 435
NciI CCSGG 1 cut(s) 51
NdeII GATC 2 cut(s) 552, 584
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 1 cut(s) 431
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PshBI ATTAAT 2 cut(s) 330, 420
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 2 cut(s) 185, 494
RsaNI GTAC 2 cut(s) 184, 493
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 330, 420, 509, 592
SatI GCNGC 1 cut(s) 430
Sau3AI GATC 2 cut(s) 552, 584
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 5 cut(s) 193, 278, 327, 391, 510
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 233, 304
TaqI TCGA 2 cut(s) 176, 334
TasI AATT 5 cut(s) 193, 278, 327, 391, 510
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 330, 420, 509, 592
Tru9I TTAA 4 cut(s) 330, 420, 509, 592
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 17, 438
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 2 cut(s) 330, 420
XceI RCATGY 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.