Rroxscaffold_3G00239730

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005565
Physical Location & Seq
Reverse (-)
30256649 .. 30272752
16104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239730.1

Sequence Viewer

Length: 405 bp
ATGGCACATAGGGGCAAGGCTAATAAGATCTTACATCTTAGTGAAGCAGTTGGGTATTCTCTATTGCCTTGGTATATTGACAAATTGAAGAGAACTAACCTCGATTCATACTGCCTCCTCGACTCTCTTGGTAATTGTTTTCATCAATTAAAAGTATCAATTCCTGTAGTGCATCATAGTTGCAAGAAAGAAATATGCGACAATTGTGCTTCTACTTCGCACCGGAGCTATGACTACCACCGGCGTAACTGGTCGCAGATCCGGGACTGGATAAGCCGACCGAACTCGCACTTCTCGAAATGGCAACGAAATTGCAAAGGCTTCTCCGGCGACCGTCAATGGCGACGATGTGGGGGCACTCTACGGAGTCGTTCGAGCTCGCCCGGCCACGCCGTGATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

134

Amino Acids

15.59

Weight (kDa)

9.74

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 394
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 228, 378
AluI AGCT 2 cut(s) 228, 378
Alw21I GWGCWC 1 cut(s) 380
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 385
AsuC2I CCSGG 2 cut(s) 263, 384
BaeGI GKGCMC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BcnI CCSGG 2 cut(s) 263, 384
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 263, 384
BmrFI CCNGG 2 cut(s) 263, 384
BmsI GCATC 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 263, 384
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 254, 272
BseDI CCNNGG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 254, 272
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 359
Bsh1285I CGRYCG 2 cut(s) 281, 334
BshFI GGCC 1 cut(s) 387
BsiEI CGRYCG 2 cut(s) 281, 334
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 5 cut(s) 223, 241, 262, 327, 384
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 359, 380
Bsp143I GATC 3 cut(s) 27, 258, 396
BspANI GGCC 1 cut(s) 387
BspPI GGATC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 2 cut(s) 254, 272
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 3 cut(s) 27, 258, 396
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 3 cut(s) 30, 261, 399
BstMBI GATC 3 cut(s) 27, 258, 396
BstMCI CGRYCG 2 cut(s) 281, 334
BstMWI GCNNNNNNNGC 2 cut(s) 327, 384
BstSCI CCNGG 2 cut(s) 261, 382
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 359
BstX2I RGATCY 2 cut(s) 27, 258
BstYI RGATCY 2 cut(s) 27, 258
BsuRI GGCC 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 240
CviJI RGCY 6 cut(s) 20, 228, 276, 321, 378, 387
CviKI_1 RGCY 6 cut(s) 20, 228, 276, 321, 378, 387
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 29, 260, 398
DpnII GATC 3 cut(s) 27, 258, 396
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 68
FaiI YATR 6 cut(s) 9, 75, 109, 177, 196, 231
FaqI GGGAC 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 387
HapII CCGG 5 cut(s) 223, 241, 262, 327, 384
HinfI GANTC 3 cut(s) 104, 122, 367
HpaII CCGG 5 cut(s) 223, 241, 262, 327, 384
Hpy188III TCNNGA 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 172, 183, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 384
HpyF3I CTNAG 1 cut(s) 38
Kzo9I GATC 3 cut(s) 27, 258, 396
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 8 cut(s) 177, 235, 236, 253, 254, 275, 340, 397
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 29, 260, 398
MboI GATC 3 cut(s) 27, 258, 396
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 2 cut(s) 27, 258
MhlI GDGCHC 2 cut(s) 359, 380
MluCI AATT 6 cut(s) 83, 133, 146, 159, 202, 310
MlyI GAGTC 2 cut(s) 116, 376
MnlI CCTC 3 cut(s) 110, 125, 128
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 5 cut(s) 223, 241, 262, 327, 384
MspR9I CCNGG 2 cut(s) 263, 384
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 327, 384
NciI CCSGG 2 cut(s) 263, 384
NdeII GATC 3 cut(s) 27, 258, 396
PcsI WCGNNNNNNNCGW 2 cut(s) 293, 396
PfeI GAWTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 261
PleI GAGTC 2 cut(s) 116, 375
PpsI GAGTC 2 cut(s) 116, 375
Psp124BI GAGCTC 1 cut(s) 380
PsuI RGATCY 2 cut(s) 27, 258
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 3 cut(s) 27, 258, 396
SchI GAGTC 2 cut(s) 116, 376
ScrFI CCNGG 2 cut(s) 263, 384
SduI GDGCHC 2 cut(s) 359, 380
SetI ASST 3 cut(s) 102, 230, 380
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 165
SgrAI CRCCGGYG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 6 cut(s) 83, 133, 146, 159, 202, 310
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 261, 382
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 5 cut(s) 102, 120, 296, 374, 399
TaqII GACCGA 1 cut(s) 295
TasI AATT 6 cut(s) 83, 133, 146, 159, 202, 310
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 96, 131
TspGWI ACGGA 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.