Rroxscaffold_4G00314930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005565
Physical Location & Seq
Forward (+)
39153142 .. 39166142
13001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314930.1

Sequence Viewer

Length: 183 bp
ATGATGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCGGGATTGGAGGTGAGTTTGTTTATTTGTTGCGGCTGCACAGATCGTTCCTTAACCTTGGTCGGTAACTCTATGGCTGTGATTTTCTTCATTTTCATTGAAGTTCTCGAGGTCTTGTTATCCATGTGTTCATCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.51

Weight (kDa)

4.05

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 75
AclWI GGATC 1 cut(s) 25
AgsI TTSAA 2 cut(s) 35, 143
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 149
ApeKI GCWGC 3 cut(s) 27, 41, 78
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 14, 53, 65
BisI GCNGC 4 cut(s) 28, 42, 76, 79
BlsI GCNGC 4 cut(s) 29, 43, 77, 80
BmeT110I CYCGRG 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 99
BseXI GCAGC 3 cut(s) 14, 53, 65
BsgI GTGCAG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 3 cut(s) 10, 17, 85
BspACI CCGC 2 cut(s) 44, 75
BspPI GGATC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 10, 17, 85
BssT1I CCWWGG 1 cut(s) 99
BstKTI GATC 3 cut(s) 13, 20, 88
BstMBI GATC 3 cut(s) 10, 17, 85
BstMCI CGRYCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 14, 53, 65
BstV2I GAAGAC 1 cut(s) 42
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 166
CviJI RGCY 3 cut(s) 27, 78, 119
CviKI_1 RGCY 3 cut(s) 27, 78, 119
DpnI GATC 3 cut(s) 12, 19, 87
DpnII GATC 3 cut(s) 10, 17, 85
Eco130I CCWWGG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 169
FaiI YATR 2 cut(s) 116, 167
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 28, 42, 76, 79
Fsp4HI GCNGC 4 cut(s) 28, 42, 76, 79
GluI GCNGC 4 cut(s) 28, 42, 76, 79
HgaI GACGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 169
HphI GGTGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 81
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 3 cut(s) 10, 17, 85
Lsp1109I GCAGC 3 cut(s) 14, 53, 65
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 12, 19, 87
MboI GATC 3 cut(s) 10, 17, 85
MboII GAAGA 2 cut(s) 47, 121
MnlI CCTC 2 cut(s) 46, 145
MseI TTAA 2 cut(s) 95, 181
MspA1I CMGCKG 1 cut(s) 44
NdeII GATC 3 cut(s) 10, 17, 85
NlaIII CATG 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 29, 43, 77, 80
Ple19I CGATCG 1 cut(s) 13
PvuI CGATCG 1 cut(s) 13
SaqAI TTAA 2 cut(s) 95, 181
SatI GCNGC 4 cut(s) 28, 42, 76, 79
Sau3AI GATC 3 cut(s) 10, 17, 85
SetI ASST 3 cut(s) 57, 101, 156
Sfr274I CTCGAG 1 cut(s) 149
SgeI CNNG 7 cut(s) 26, 57, 112, 161, 163, 169, 178
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 2 cut(s) 44, 75
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 150
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 95, 181
Tru9I TTAA 2 cut(s) 95, 181
TseI GCWGC 3 cut(s) 27, 41, 78
TspDTI ATGAA 3 cut(s) 121, 127, 162
XhoI CTCGAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.