Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005565

Physical Location & Seq

Genomic Coordinates Forward (+)

36367044 .. 36383134

Gene Structure 16091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAAGAGCTTAGGGGAAATGATCTATGTCAAAAACCGAACCTTCGACGCCAATTTGGTGGCGGAGACGGCCGAATCGCCGGAAATCGACCGAAAACCCGATCTGCTACAGTAAACTTCGTGGCTCAATTCCGAGCTCCACCGGCCGAGGCACCGCAAAGCACCACCACGGGCGTGACCAGGGTGAAGAGACGAGCCACCGATGCCGGATTCCGACATGGGGTGGCGGAGGAGGAAGAAATCGGAGGGAGAAGAAACCGGCCGAAGAAGAGAAAGGATCGGGGGAGAGGAGAGAGAAAAGCTGGGGCCAAGACCATTGTAGTCAAGTACAACGGCGCCGCCATGAAGGAGGACACCGTCCAGGCCACGGACAGCCTCATCTATCCAACGCCTCCGCCTCGTCCTCTTCCCGCTCAACCCTCGCTTAGATCCAGTCCCCGTAAGGCTTCTCTCCCAAAGACAATGGAGTGTCACCGTCCATCCAACTCTACCATATCTACCGTCATGTTCGATGACAAGGTTATAAAGCTTTGGGATCGGGAGAAGGACCGGGAATGCACTCGTGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCGAAAGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGGAATGGAAACCTCTGGATTTAGCTCGACAAGGATTGTTTGGTGGAAGTGAGTCCTTTTTGGATGTTGAAAGTGCTCGATTGAAAATTTTATCCAGAGCGGAGCTCCGCTTTGAAGTTAACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

261

Amino Acids

29.12

Weight (kDa)

10.17

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	153 - 223	2.3e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	161 - 222	6.4e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	170 - 223	3.1e-11	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	170 - 223	4.7e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	171 - 223	3.3e-09	THOC3 beta-propeller domain
WD40	PF00400	185 - 222	5.8e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005565)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Species

Orthologous Gene IDs

rosa_roxburghii

Rroxscaffold_1G00005150 Rroxscaffold_1G00010510 Rroxscaffold_1G00024600 Rroxscaffold_1G00025900 Rroxscaffold_1G00028190 Rroxscaffold_1G00031400 Rroxscaffold_3G00220370 Rroxscaffold_3G00220380 Rroxscaffold_3G00239060 Rroxscaffold_3G00239720 Rroxscaffold_3G00239730 Rroxscaffold_3G00240630 Rroxscaffold_4G00314760 Rroxscaffold_4G00314780 Rroxscaffold_4G00314930 Rroxscaffold_4G00324730 Rroxscaffold_5G00336100 Rroxscaffold_5G00337340 Rroxscaffold_5G00337410 Rroxscaffold_5G00353660 Rroxscaffold_5G00353670 Rroxscaffold_5G00356920 Rroxscaffold_6G00389770 Rroxscaffold_6G00404140 Rroxscaffold_7G00183480 Rroxscaffold_7G00197170 Rroxscaffold_7G00197190 Rroxscaffold_7G00197200 Rroxscaffold_7G00200850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AccB1I	GGYRCC	2 cut(s)	151, 335
AccBSI	CCGCTC	2 cut(s)	413, 758
AciI	CCGC	8 cut(s)	63, 155, 227, 339, 395, 411, 758, 766
AclWI	GGATC	3 cut(s)	285, 423, 543
AcoI	YGGCCR	3 cut(s)	70, 144, 260
AcsI	RAATTY	1 cut(s)	744
AcyI	GRCGYC	2 cut(s)	49, 336
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	220, 367
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	4 cut(s)	607, 728, 742, 773
AjnI	CCWGG	2 cut(s)	179, 360
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	6 cut(s)	10, 137, 302, 529, 683, 763
AluI	AGCT	6 cut(s)	10, 137, 302, 529, 683, 763
Alw21I	GWGCWC	3 cut(s)	139, 736, 765
Alw26I	GTCTC	2 cut(s)	60, 184
AlwI	GGATC	3 cut(s)	285, 423, 543
AoxI	GGCC	5 cut(s)	70, 144, 260, 306, 363
ApoI	RAATTY	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	306, 547
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	2 cut(s)	196, 464
AvaII	GGWCC	1 cut(s)	547
BanI	GGYRCC	2 cut(s)	151, 335
BanII	GRGCYC	2 cut(s)	139, 765
BauI	CACGAG	1 cut(s)	561
Bbv12I	GWGCWC	3 cut(s)	139, 736, 765
BccI	CCATC	2 cut(s)	487, 641
BceAI	ACGGC	2 cut(s)	85, 349
BciT130I	CCWGG	2 cut(s)	181, 362
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	60, 184
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	3 cut(s)	181, 362, 551
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	306, 547
BmiI	GGNNCC	4 cut(s)	153, 307, 337, 652
BmrFI	CCNGG	3 cut(s)	181, 362, 551
BmsI	GCATC	2 cut(s)	193, 582
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
Bpu10I	CCTNAGC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	551
BsaHI	GRCGYC	2 cut(s)	49, 336
BsaJI	CCNNGG	4 cut(s)	147, 168, 180, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 367
Bse118I	RCCGGY	2 cut(s)	142, 258
Bse1I	ACTGG	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	181, 362
BseDI	CCNNGG	4 cut(s)	147, 168, 180, 366
BseGI	GGATG	2 cut(s)	479, 727
BseLI	CCNNNNNNNGG	2 cut(s)	220, 367
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	2 cut(s)	245, 303
BseX3I	CGGCCG	3 cut(s)	70, 144, 260
BseYI	CCCAGC	1 cut(s)	302
Bsh1285I	CGRYCG	4 cut(s)	73, 92, 147, 263
BshFI	GGCC	5 cut(s)	72, 146, 262, 308, 365
BshNI	GGYRCC	2 cut(s)	151, 335
BsiEI	CGRYCG	4 cut(s)	73, 92, 147, 263
BsiHKAI	GWGCWC	3 cut(s)	139, 736, 765
BsiSI	CCGG	5 cut(s)	81, 143, 207, 259, 550
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	220, 367
BsmAI	GTCTC	2 cut(s)	60, 184
BsmBI	CGTCTC	2 cut(s)	60, 184
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	2 cut(s)	560, 577
BsnI	GGCC	5 cut(s)	72, 146, 262, 308, 365
Bsp1286I	GDGCHC	3 cut(s)	139, 736, 765
Bsp143I	GATC	5 cut(s)	22, 101, 277, 428, 535
BspACI	CCGC	8 cut(s)	63, 155, 227, 339, 395, 411, 758, 766
BspANI	GGCC	5 cut(s)	72, 146, 262, 308, 365
BspLI	GGNNCC	4 cut(s)	153, 307, 337, 652
BspPI	GGATC	3 cut(s)	285, 423, 543
BspT107I	GGYRCC	2 cut(s)	151, 335
BsrBI	CCGCTC	2 cut(s)	413, 758
BsrFI	RCCGGY	2 cut(s)	142, 258
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	2 cut(s)	142, 258
BssECI	CCNNGG	4 cut(s)	147, 168, 180, 366
BssMI	GATC	5 cut(s)	22, 101, 277, 428, 535
BssNI	GRCGYC	2 cut(s)	49, 336
BssSI	CACGAG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	181, 362
Bst4CI	ACNGT	4 cut(s)	112, 358, 476, 502
Bst6I	CTCTTC	3 cut(s)	182, 263, 411
BstACI	GRCGYC	2 cut(s)	49, 336
BstDEI	CTNAG	2 cut(s)	11, 425
BstDSI	CCRYGG	2 cut(s)	168, 366
BstF5I	GGATG	2 cut(s)	479, 727
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	25, 104, 280, 431, 538
BstMAI	GTCTC	2 cut(s)	60, 184
BstMBI	GATC	5 cut(s)	22, 101, 277, 428, 535
BstMCI	CGRYCG	4 cut(s)	73, 92, 147, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 143, 203
BstNI	CCWGG	2 cut(s)	181, 362
BstSCI	CCNGG	3 cut(s)	179, 360, 549
BstSFI	CTRYAG	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	428
BstZI	CGGCCG	3 cut(s)	70, 144, 260
BsuRI	GGCC	5 cut(s)	72, 146, 262, 308, 365
BtgI	CCRYGG	2 cut(s)	168, 366
BtsCI	GGATG	2 cut(s)	479, 727
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	2 cut(s)	142, 258
Cfr13I	GGNCC	2 cut(s)	306, 547
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	3 cut(s)	218, 343, 505
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	11, 425
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	5 cut(s)	24, 103, 279, 430, 537
DpnII	GATC	5 cut(s)	22, 101, 277, 428, 535
DraIII	CACNNNGTG	1 cut(s)	589
EaeI	YGGCCR	3 cut(s)	70, 144, 260
EagI	CGGCCG	3 cut(s)	70, 144, 260
Eam1104I	CTCTTC	3 cut(s)	182, 263, 411
EarI	CTCTTC	3 cut(s)	182, 263, 411
EciI	GGCGGA	3 cut(s)	78, 242, 384
Ecl136II	GAGCTC	2 cut(s)	137, 763
EclXI	CGGCCG	3 cut(s)	70, 144, 260
Eco24I	GRGCYC	2 cut(s)	139, 765
Eco47I	GGWCC	1 cut(s)	547
Eco52I	CGGCCG	3 cut(s)	70, 144, 260
Eco53kI	GAGCTC	2 cut(s)	137, 763
EcoICRI	GAGCTC	2 cut(s)	137, 763
EcoRII	CCWGG	2 cut(s)	179, 360
EcoT38I	GRGCYC	2 cut(s)	139, 765
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
Esp3I	CGTCTC	2 cut(s)	60, 184
FaeI	CATG	3 cut(s)	221, 346, 508
FaiI	YATR	7 cut(s)	28, 219, 344, 494, 506, 524, 588
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	217, 342, 504
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	466, 734
FriOI	GRGCYC	2 cut(s)	139, 765
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	72, 146, 262, 308, 365
HapII	CCGG	5 cut(s)	81, 143, 207, 259, 550
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	49, 336
Hin1II	CATG	3 cut(s)	221, 346, 508
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	3 cut(s)	75, 210, 710
HpaI	GTTAAC	1 cut(s)	778
HpaII	CCGG	5 cut(s)	81, 143, 207, 259, 550
HphI	GGTGA	2 cut(s)	196, 464
Hpy166II	GTNNAC	2 cut(s)	115, 778
Hpy188I	TCNGA	4 cut(s)	134, 215, 245, 612
Hpy188III	TCNNGA	4 cut(s)	539, 644, 674, 753
Hpy8I	GTNNAC	2 cut(s)	115, 778
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	53, 340, 538
HpyCH4III	ACNGT	4 cut(s)	112, 358, 476, 502
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	2 cut(s)	558, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 143, 203
HpyF3I	CTNAG	2 cut(s)	11, 425
HpySE526I	ACGT	1 cut(s)	780
Hsp92I	GRCGYC	2 cut(s)	49, 336
Hsp92II	CATG	3 cut(s)	221, 346, 508
HspAI	GCGC	1 cut(s)	336
KasI	GGCGCC	1 cut(s)	335
KspAI	GTTAAC	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	22, 101, 277, 428, 535
LmnI	GCTCC	3 cut(s)	142, 760, 768
LweI	GCATC	2 cut(s)	193, 582
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	2 cut(s)	175, 470
MalI	GATC	5 cut(s)	24, 103, 279, 430, 537
MbiI	CCGCTC	2 cut(s)	413, 758
MboI	GATC	5 cut(s)	22, 101, 277, 428, 535
MboII	GAAGA	6 cut(s)	199, 248, 264, 277, 280, 398
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	3 cut(s)	139, 736, 765
MluCI	AATT	3 cut(s)	53, 128, 744
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	3 cut(s)	238, 410, 507
MseI	TTAA	2 cut(s)	657, 777
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	5 cut(s)	81, 143, 207, 259, 550
MspR9I	CCNGG	3 cut(s)	181, 362, 551
Mva1269I	GAATGC	2 cut(s)	560, 577
MvaI	CCWGG	2 cut(s)	181, 362
MwoI	GCNNNNNNNGC	3 cut(s)	69, 143, 203
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	5 cut(s)	22, 101, 277, 428, 535
NlaIII	CATG	3 cut(s)	221, 346, 508
NlaIV	GGNNCC	4 cut(s)	153, 307, 337, 652
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	175, 470
OliI	CACNNNNGTG	1 cut(s)	173
PctI	GAATGC	2 cut(s)	560, 577
PfeI	GAWTC	2 cut(s)	75, 210
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	718
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	718
PsiI	TTATAA	1 cut(s)	524
Psp124BI	GAGCTC	2 cut(s)	139, 765
Psp6I	CCWGG	2 cut(s)	179, 360
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	179, 360
PspN4I	GGNNCC	4 cut(s)	153, 307, 337, 652
PspPI	GGNCC	2 cut(s)	306, 547
PsuI	RGATCY	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	2 cut(s)	139, 765
SaqAI	TTAA	2 cut(s)	657, 777
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	5 cut(s)	22, 101, 277, 428, 535
Sau96I	GGNCC	2 cut(s)	306, 547
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	3 cut(s)	181, 362, 551
SduI	GDGCHC	3 cut(s)	139, 736, 765
SfaNI	GCATC	2 cut(s)	193, 582
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	53, 128, 744
SsiI	CCGC	8 cut(s)	63, 155, 227, 339, 395, 411, 758, 766
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	2 cut(s)	139, 765
StyD4I	CCNGG	3 cut(s)	179, 360, 549
TaaI	ACNGT	4 cut(s)	112, 358, 476, 502
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	6 cut(s)	46, 88, 510, 645, 685, 736
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	3 cut(s)	53, 128, 744
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	75, 210
Tru1I	TTAA	2 cut(s)	657, 777
Tru9I	TTAA	2 cut(s)	657, 777
TseFI	GTSAC	2 cut(s)	175, 470
Tsp45I	GTSAC	2 cut(s)	175, 470
TspDTI	ATGAA	2 cut(s)	17, 359
TspGWI	ACGGA	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	744
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.