AT1G09950

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002774
Physical Location & Seq
Reverse (-)
3240531 .. 3241863
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09950.1

Sequence Viewer

Length: 693 bp
ATGCCAAACACTAGCAGCTCTCAAAGCTTCACTATCTTCGTTGATGGTTGGTTAATCCGTCACAGGTATTTCGTTGAACAGCTTATGTGTGCTTCTTCCTTGGATGAAACTAATCGTATCTCTCTCGAAGAACAACAATCTCTCGTGGCCCAGTTTCTATCTCACTGTCTTCAATACTACCAAGAGAAATTCGCCTCCGTTTCCCTCGCCGGGGACAACGTTTTCACTTTCTTCTGCCCACCGTGGTTTAACTCCTACGCTAAACTTATTTTATGGGTCGGCGATTTCAAGCCTTCTCTTGTGTTTAAACTCACCGAGGTCTCCGTGGCCGACCTCACGCGCCACCAGAAAGACCGGATCTCGAGTCTTAAGTCGGAGACTAGGAGGAAAGAGAGAGAAGTTATGCGAGATTTCGCCCTCGTGCAACAAAGCGTGGCGGATCCGCCGGTGATGCTCGCGGCGAGGCGCGTGGGAGCGGTGGGAATGGTGGACGGAGAAGAAACGGATTTGGAGGAGGCGATGGAGGTGCTTAAAGCTGGGATGGCGGCAGCGATGAACAACGCTGATCAGCTACGGTGTTCGACGGTGGGGAAAGTGGTGGAGATTCTTACTCCGCCGCAAGCGATTAAAGTGTTGAGGACAATCGGACAGCTTCACCTCCGTCTGAGAGACAGAGACCAAGAAAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

230

Amino Acids

26.09

Weight (kDa)

6.12

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 40 - 104 5.1e-12 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 476
AccII CGCG 3 cut(s) 340, 458, 468
AciI CCGC 7 cut(s) 437, 443, 458, 476, 545, 614, 617
AclI AACGTT 1 cut(s) 219
AclWI GGATC 3 cut(s) 365, 434, 447
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 210, 211
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 77, 173, 289
AluBI AGCT 7 cut(s) 18, 27, 82, 536, 571, 652, 689
AluI AGCT 7 cut(s) 18, 27, 82, 536, 571, 652, 689
Alw26I GTCTC 4 cut(s) 325, 371, 663, 669
AlwI GGATC 3 cut(s) 365, 434, 447
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 2 cut(s) 147, 327
ApeKI GCWGC 2 cut(s) 15, 548
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 2 cut(s) 342, 468
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 304, 460, 647
AvaI CYCGRG 1 cut(s) 361
BamHI GGATCC 1 cut(s) 439
BauI CACGAG 2 cut(s) 143, 419
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 27, 560
BccI CCATC 3 cut(s) 38, 514, 535
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 4 cut(s) 325, 371, 663, 669
BfaI CTAG 2 cut(s) 12, 381
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 5 cut(s) 16, 459, 546, 549, 617
BlsI GCNGC 5 cut(s) 17, 460, 547, 550, 618
Bme1390I CCNGG 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 211
BsaI GGTCTC 2 cut(s) 325, 669
BsaJI CCNNGG 5 cut(s) 99, 210, 242, 315, 324
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 211
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 5 cut(s) 99, 210, 242, 315, 324
BseGI GGATG 2 cut(s) 109, 546
BseLI CCNNNNNNNGG 2 cut(s) 210, 211
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 27, 560
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 3 cut(s) 340, 458, 468
BshFI GGCC 2 cut(s) 149, 329
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 3 cut(s) 210, 355, 446
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 210, 211
BsmAI GTCTC 4 cut(s) 325, 371, 663, 669
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 149, 329
Bso31I GGTCTC 2 cut(s) 325, 669
BsoBI CYCGRG 1 cut(s) 361
Bsp143I GATC 3 cut(s) 357, 439, 565
BspACI CCGC 7 cut(s) 437, 443, 458, 476, 545, 614, 617
BspANI GGCC 2 cut(s) 149, 329
BspCNI CTCAG 1 cut(s) 657
BspFNI CGCG 3 cut(s) 340, 458, 468
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 3 cut(s) 365, 434, 447
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 2 cut(s) 325, 669
BsrBI CCGCTC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 5 cut(s) 99, 210, 242, 315, 324
BssMI GATC 3 cut(s) 357, 439, 565
BssSI CACGAG 2 cut(s) 143, 419
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 2 cut(s) 143, 419
Bst4CI ACNGT 4 cut(s) 167, 243, 576, 586
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 456, 621
BstDEI CTNAG 1 cut(s) 665
BstDSI CCRYGG 2 cut(s) 242, 324
BstF5I GGATG 2 cut(s) 109, 546
BstFNI CGCG 3 cut(s) 340, 458, 468
BstHHI GCGC 2 cut(s) 342, 468
BstKTI GATC 3 cut(s) 360, 442, 568
BstMAI GTCTC 4 cut(s) 325, 371, 663, 669
BstMBI GATC 3 cut(s) 357, 439, 565
BstMWI GCNNNNNNNGC 3 cut(s) 24, 451, 542
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 3 cut(s) 340, 458, 468
BstV1I GCAGC 2 cut(s) 27, 560
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 357, 439
BstYI RGATCY 2 cut(s) 357, 439
BsuRI GGCC 2 cut(s) 149, 329
BtgI CCRYGG 2 cut(s) 242, 324
BtgZI GCGATG 2 cut(s) 533, 566
BtsCI GGATG 2 cut(s) 109, 546
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 456, 621
CfoI GCGC 2 cut(s) 342, 468
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 665
DpnI GATC 3 cut(s) 359, 441, 567
DpnII GATC 3 cut(s) 357, 439, 565
DraI TTTAAA 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 327
EciI GGCGGA 3 cut(s) 432, 452, 603
Eco130I CCWWGG 1 cut(s) 99
Eco31I GGTCTC 2 cut(s) 325, 669
Eco88I CYCGRG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaiI YATR 3 cut(s) 86, 274, 404
FaqI GGGAC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 5 cut(s) 16, 459, 546, 549, 617
FokI GGATG 2 cut(s) 116, 553
Fsp4HI GCNGC 5 cut(s) 16, 459, 546, 549, 617
FspBI CTAG 2 cut(s) 12, 381
GlaI GCGC 2 cut(s) 341, 467
GluI GCNGC 5 cut(s) 16, 459, 546, 549, 617
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 2 cut(s) 149, 329
HapII CCGG 3 cut(s) 210, 355, 446
HhaI GCGC 2 cut(s) 342, 468
Hin6I GCGC 2 cut(s) 340, 466
HinP1I GCGC 2 cut(s) 340, 466
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 364, 604
HpaII CCGG 3 cut(s) 210, 355, 446
HphI GGTGA 3 cut(s) 304, 460, 647
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 376, 647, 666
Hpy188III TCNNGA 2 cut(s) 125, 361
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 1 cut(s) 586
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 4 cut(s) 167, 243, 576, 586
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 451, 542
HpyF3I CTNAG 1 cut(s) 665
HpySE526I ACGT 1 cut(s) 219
HspAI GCGC 2 cut(s) 340, 466
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 357, 439, 565
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 7 cut(s) 49, 164, 223, 359, 368, 459, 522
Lsp1109I GCAGC 2 cut(s) 27, 560
LweI GCATC 1 cut(s) 441
MaeI CTAG 2 cut(s) 12, 381
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 359, 441, 567
MbiI CCGCTC 1 cut(s) 476
MboI GATC 3 cut(s) 357, 439, 565
MboII GAAGA 6 cut(s) 28, 87, 140, 161, 223, 509
MflI RGATCY 2 cut(s) 357, 439
MluCI AATT 1 cut(s) 188
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 354
MseI TTAA 7 cut(s) 53, 249, 306, 369, 531, 627, 691
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 3 cut(s) 210, 355, 446
MspR9I CCNGG 1 cut(s) 211
MssI GTTTAAAC 1 cut(s) 307
MvnI CGCG 3 cut(s) 340, 458, 468
MwoI GCNNNNNNNGC 3 cut(s) 24, 451, 542
NciI CCSGG 1 cut(s) 211
NdeII GATC 3 cut(s) 357, 439, 565
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 361
PfeI GAWTC 1 cut(s) 604
PkrI GCNGC 5 cut(s) 17, 460, 547, 550, 618
PleI GAGTC 1 cut(s) 372
PmeI GTTTAAAC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 148
PsuI RGATCY 2 cut(s) 357, 439
SaqAI TTAA 7 cut(s) 53, 249, 306, 369, 531, 627, 691
SatI GCNGC 5 cut(s) 16, 459, 546, 549, 617
Sau3AI GATC 3 cut(s) 357, 439, 565
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 211
SfaNI GCATC 1 cut(s) 441
Sfr274I CTCGAG 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 361, 368
SmoI CTYRAG 2 cut(s) 361, 368
Sse9I AATT 1 cut(s) 188
SsiI CCGC 7 cut(s) 437, 443, 458, 476, 545, 614, 617
SspMI CTAG 2 cut(s) 12, 381
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 167, 243, 576, 586
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 126, 362, 581
TasI AATT 1 cut(s) 188
TauI GCSGC 3 cut(s) 461, 548, 619
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 7 cut(s) 53, 249, 306, 369, 531, 627, 691
Tru9I TTAA 7 cut(s) 53, 249, 306, 369, 531, 627, 691
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 15, 548
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 120, 569
TspGWI ACGGA 6 cut(s) 47, 187, 313, 507, 518, 650
TspRI CASTG 1 cut(s) 170
Vha464I CTTAAG 1 cut(s) 368
XapI RAATTY 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 361
XspI CTAG 2 cut(s) 12, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.