RLG00000001322

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002774
Physical Location & Seq
Reverse (-)
14123817 .. 14124497
681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001322

Sequence Viewer

Length: 681 bp
ATGTCTCACCCAATCCGAGAGCGCTTCGTCGTTTTTCTCCAAGACTGGCTACTCCGGCAGCAAGACTTGCTCGACCAACTCCTGCTCTGCTCTGCTTCAGTCAAAGACGACGATGACGACGACCGTCAGAGGCATTTGATCGAACAGGTTCTGTGCCACTACCAGCAGTACTTCCACGAGAAGTCCCGCACCGCCGAGGAGGACGTTTTCGTCATTTTCTCTCCCCCCTGGCTCTCCTCCCTAGAGCGCGCCTTGCTCTGGCTCGCCGGCTTCAAGCCCTCGATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAACCGGACCAGGCGAGGGAGCTGGAGAATCTCAAGCTGGAGACGCGGAGGAGCGAGAGGGAGCTGTCGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGGAGACGGCGAGGAGAGTGGGGAGGTTGATGGACGGTGAGATTTCGACGTTGGATGAGGCGATGGAGGCGCTGAAGGCGAAGATGCTGAGGTTGACTGAGAGCGCCGACGGACTTCGTGGGTCGACGGCGAGGAAGGTGGTGGAGGTTTTGAGTCCGAGTCAGACTGTGAAGGTTTTGGCGGCAGTGGCGCAGTTTCAGCTCAGAATTCGAAGTTGGGGGTTGCAGAGAGACCAGCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

227

Amino Acids

26.13

Weight (kDa)

5.7

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 35 - 101 1.3e-24 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 560
AccII CGCG 2 cut(s) 249, 367
AciI CCGC 6 cut(s) 187, 192, 367, 422, 428, 617
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 81, 530
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 258, 337
AgsI TTSAA 2 cut(s) 274, 322
AjnI CCWGG 2 cut(s) 227, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
AluBI AGCT 5 cut(s) 343, 358, 385, 637, 678
AluI AGCT 5 cut(s) 343, 358, 385, 637, 678
Alw26I GTCTC 5 cut(s) 9, 296, 356, 434, 660
AlwNI CAGNNNCTG 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 7 cut(s) 24, 249, 251, 427, 508, 542, 628
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 485
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 424
BauI CACGAG 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 460, 493
BceAI ACGGC 2 cut(s) 459, 579
BciT130I CCWGG 2 cut(s) 229, 332
BcoDI GTCTC 5 cut(s) 9, 296, 356, 434, 660
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 4 cut(s) 25, 428, 509, 543
BisI GCNGC 4 cut(s) 59, 423, 428, 618
BlsI GCNGC 4 cut(s) 60, 424, 429, 619
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 229, 332
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 229, 332
BmsI GCATC 1 cut(s) 510
BoxI GACNNNNGTC 1 cut(s) 123
BpmI CTGGAG 3 cut(s) 365, 380, 458
Bpu10I CCTNAGC 1 cut(s) 524
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 2 cut(s) 296, 660
BsaJI CCNNGG 2 cut(s) 195, 227
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 337
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 2 cut(s) 229, 332
BseDI CCNNGG 2 cut(s) 195, 227
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 258, 337
BseMII CTCAG 3 cut(s) 515, 525, 652
BseNI ACTGG 1 cut(s) 50
BsePI GCGCGC 1 cut(s) 247
BseRI GAGGAG 4 cut(s) 212, 226, 385, 463
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 249, 367
Bsh1285I CGRYCG 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 424
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 3 cut(s) 55, 267, 326
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 258, 337
BsmAI GTCTC 5 cut(s) 9, 296, 356, 434, 660
BsmBI CGTCTC 2 cut(s) 356, 434
BsmFI GGGAC 1 cut(s) 169
Bso31I GGTCTC 2 cut(s) 296, 660
Bsp119I TTCGAA 1 cut(s) 646
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 6 cut(s) 187, 192, 367, 422, 428, 617
BspCNI CTCAG 3 cut(s) 516, 526, 651
BspFNI CGCG 2 cut(s) 249, 367
BspLI GGNNCC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 2 cut(s) 296, 660
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 195, 227
BssHII GCGCGC 1 cut(s) 247
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 425
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 229, 332
Bst4CI ACNGT 3 cut(s) 125, 473, 604
BstACI GRCGYC 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 249, 264, 268
BstDEI CTNAG 3 cut(s) 524, 534, 638
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 2 cut(s) 249, 367
BstH2I RGCGCY 4 cut(s) 25, 428, 509, 543
BstHHI GCGC 7 cut(s) 24, 249, 251, 427, 508, 542, 628
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 5 cut(s) 9, 296, 356, 434, 660
BstMBI GATC 1 cut(s) 138
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 8 cut(s) 55, 67, 253, 364, 503, 512, 623, 634
BstNI CCWGG 2 cut(s) 229, 332
BstPAI GACNNNNGTC 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 227, 330
BstUI CGCG 2 cut(s) 249, 367
BstV1I GCAGC 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 512
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 3 cut(s) 249, 264, 268
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 7 cut(s) 24, 249, 251, 427, 508, 542, 628
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 524, 534, 638
DinI GGCGCC 1 cut(s) 426
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eco31I GGTCTC 2 cut(s) 296, 660
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 23
Eco57I CTGAAG 2 cut(s) 81, 530
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 227, 330
EgeI GGCGCC 1 cut(s) 426
EheI GGCGCC 1 cut(s) 426
Esp3I CGTCTC 2 cut(s) 356, 434
FaeI CATG 1 cut(s) 298
FaiI YATR 1 cut(s) 296
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 4 cut(s) 59, 423, 428, 618
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 4 cut(s) 59, 423, 428, 618
FspBI CTAG 1 cut(s) 242
GlaI GCGC 7 cut(s) 23, 248, 250, 426, 507, 541, 627
GluI GCNGC 4 cut(s) 59, 423, 428, 618
GsuI CTGGAG 3 cut(s) 365, 380, 458
HaeII RGCGCY 4 cut(s) 25, 428, 509, 543
HapII CCGG 3 cut(s) 55, 267, 326
HgaI GACGC 1 cut(s) 373
HhaI GCGC 7 cut(s) 24, 249, 251, 427, 508, 542, 628
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 7 cut(s) 22, 247, 249, 425, 506, 540, 626
HinP1I GCGC 7 cut(s) 22, 247, 249, 425, 506, 540, 626
HincII GTYRAC 2 cut(s) 531, 561
HindII GTYRAC 2 cut(s) 531, 561
HinfI GANTC 6 cut(s) 286, 349, 406, 433, 589, 595
HpaII CCGG 3 cut(s) 55, 267, 326
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 2 cut(s) 531, 561
Hpy188I TCNGA 6 cut(s) 17, 129, 391, 594, 600, 641
Hpy188III TCNNGA 4 cut(s) 301, 314, 410, 437
Hpy8I GTNNAC 2 cut(s) 531, 561
Hpy99I CGWCG 6 cut(s) 32, 113, 122, 487, 548, 565
HpyAV CCTTC 3 cut(s) 505, 565, 601
HpyCH4III ACNGT 3 cut(s) 125, 473, 604
HpyCH4IV ACGT 2 cut(s) 204, 485
HpyCH4V TGCA 1 cut(s) 661
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 67, 253, 364, 503, 512, 623, 634
HpyF3I CTNAG 3 cut(s) 524, 534, 638
HpySE526I ACGT 2 cut(s) 204, 485
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 7 cut(s) 22, 247, 249, 425, 506, 540, 626
KasI GGCGCC 1 cut(s) 424
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 3 cut(s) 340, 372, 382
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 510
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 204, 485
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 529
MluCI AATT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 425
MlyI GAGTC 2 cut(s) 598, 604
MmeI TCCRAC 2 cut(s) 369, 468
MroNI GCCGGC 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 147
MspI CCGG 3 cut(s) 55, 267, 326
MspR9I CCNGG 2 cut(s) 229, 332
MvaI CCWGG 2 cut(s) 229, 332
MvnI CGCG 2 cut(s) 249, 367
MwoI GCNNNNNNNGC 8 cut(s) 55, 67, 253, 364, 503, 512, 623, 634
NaeI GCCGGC 1 cut(s) 268
NarI GGCGCC 1 cut(s) 425
NdeII GATC 1 cut(s) 138
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 426
NmeAIII GCCGAG 1 cut(s) 220
NspV TTCGAA 1 cut(s) 646
PauI GCGCGC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 117, 306
PdiI GCCGGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 286, 349, 406, 433
PkrI GCNGC 4 cut(s) 60, 424, 429, 619
PleI GAGTC 2 cut(s) 597, 603
PluTI GGCGCC 1 cut(s) 428
PpsI GAGTC 2 cut(s) 597, 603
PshAI GACNNNNGTC 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 227, 330
PspGI CCWGG 2 cut(s) 227, 330
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 151
PteI GCGCGC 1 cut(s) 247
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SalI GTCGAC 1 cut(s) 559
SatI GCNGC 4 cut(s) 59, 423, 428, 618
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 598, 604
ScrFI CCNGG 2 cut(s) 229, 332
SfaNI GCATC 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 1 cut(s) 642
SsiI CCGC 6 cut(s) 187, 192, 367, 422, 428, 617
SspDI GGCGCC 1 cut(s) 424
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 227, 330
TaaI ACNGT 3 cut(s) 125, 473, 604
TaiI ACGT 2 cut(s) 207, 488
TaqI TCGA 7 cut(s) 72, 141, 281, 300, 482, 560, 646
TasI AATT 1 cut(s) 642
TatI WGTACW 1 cut(s) 168
TauI GCSGC 3 cut(s) 425, 430, 620
TfiI GAWTC 4 cut(s) 286, 349, 406, 433
TscAI CASTG 1 cut(s) 627
TseI GCWGC 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 298, 561
TspRI CASTG 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.