RchiOBHm_Chr7g0232201

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002774
Physical Location & Seq
Reverse (-)
56156046 .. 56156312
267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20812

Sequence Viewer

Length: 267 bp
ATGATTCTATGCATGGCGGAGACCTCCGCCGGGGACTTGAATTCCGACCAGGCGAGGCAACTGGACCGTCTAAAACTGGAGACGTGGAGGAGAGAGAGGGAGCTGTCGGAGACAATAGCGAAGATTCAAGAGAGCGTGGCAGCGCCACCTATTCTGGAGACGGGGAGGAAAGTGGGGAGGTTGATGGACGGTGAGATTTCGACGTTGGAGGTGTTGAAGGTGGCGATGCTGAGGTTGACTGAGAGCGCCGACGGGCTTCGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

88

Amino Acids

9.78

Weight (kDa)

5.16

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 27
AcsI RAATTY 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 3 cut(s) 40, 128, 217
AjiI CACGTC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 4 cut(s) 14, 74, 104, 152
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 2 cut(s) 145, 248
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 4 cut(s) 14, 74, 104, 152
BfaI CTAG 1 cut(s) 265
BfoI RGCGCY 2 cut(s) 146, 249
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 31, 50
Bme18I GGWCC 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 31, 50
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 98, 176
Bpu10I CCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 66, 81
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 221, 231
BseNI ACTGG 2 cut(s) 66, 81
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 4 cut(s) 14, 74, 104, 152
BsmBI CGTCTC 2 cut(s) 74, 152
BsmFI GGGAC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 14
BspACI CCGC 2 cut(s) 17, 27
BspCNI CTCAG 2 cut(s) 222, 232
BspTNI GGTCTC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 66, 81
BssECI CCNNGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 68, 191
BstDEI CTNAG 2 cut(s) 230, 240
BstH2I RGCGCY 2 cut(s) 146, 249
BstHHI GCGC 2 cut(s) 145, 248
BstMAI GTCTC 4 cut(s) 14, 74, 104, 152
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 29, 48
BstV1I GCAGC 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 84
CfoI GCGC 2 cut(s) 145, 248
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 103, 256, 264
CviKI_1 RGCY 3 cut(s) 103, 256, 264
DdeI CTNAG 2 cut(s) 230, 240
EciI GGCGGA 2 cut(s) 16, 32
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 14
Esp3I CGTCTC 2 cut(s) 74, 152
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 10, 14
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 265
GlaI GCGC 2 cut(s) 144, 247
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 98, 176
HaeII RGCGCY 2 cut(s) 146, 249
HapII CCGG 1 cut(s) 30
HhaI GCGC 2 cut(s) 145, 248
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 143, 246
HinP1I GCGC 2 cut(s) 143, 246
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 2 cut(s) 4, 124
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 46, 109
Hpy188III TCNNGA 2 cut(s) 128, 155
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 2 cut(s) 205, 254
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 68, 191
HpyCH4IV ACGT 2 cut(s) 83, 203
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 230, 240
HpySE526I ACGT 2 cut(s) 83, 203
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 143, 246
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 35, 43, 47, 62, 62, 140
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 265
MaeII ACGT 2 cut(s) 83, 203
MboII GAAGA 1 cut(s) 133
MluCI AATT 1 cut(s) 40
MmeI TCCRAC 3 cut(s) 69, 87, 186
MnlI CCTC 9 cut(s) 34, 48, 81, 90, 159, 171, 202, 225, 254
Mph1103I ATGCAT 1 cut(s) 14
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 31, 50
MvaI CCWGG 1 cut(s) 50
NciI CCSGG 1 cut(s) 31
NlaIII CATG 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 14
PfeI GAWTC 2 cut(s) 4, 124
PkrI GCNGC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 1 cut(s) 64
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 31, 50
SetI ASST 9 cut(s) 26, 86, 105, 151, 182, 206, 213, 222, 236
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 64
Sse9I AATT 1 cut(s) 40
SsiI CCGC 2 cut(s) 17, 27
SspMI CTAG 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 29, 48
TaaI ACNGT 2 cut(s) 68, 191
TaiI ACGT 2 cut(s) 86, 206
TaqI TCGA 2 cut(s) 200, 259
TasI AATT 1 cut(s) 40
TfiI GAWTC 2 cut(s) 4, 124
TseI GCWGC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 40
XspI CTAG 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.