Rmu_sc0039562.1_g000001

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039562.1
OG0002774
Physical Location & Seq
Forward (+)
228 .. 795
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039562.1_g000001.1.cds

Sequence Viewer

Length: 568 bp
atgacgtcattcgaggcattcttcgagggctggctggttcggcaagagcactacttggacgaactccaatcggcccagcagcgagcccatgaagcccgcgacgtcgatctgcgagacctcgtctctcgggtgctgatccattaccagcaatactatgaagagaaatcgagaattgcgcagagagatgtgttcctggtgttttctccgacttggttcacttcgctggagcgggccctgctctggatcgccgggttcaagccgggtctggcattccggctggtctcggactccgtacccgacttgtccgcggaccagcgggtccggatgacccggctcatcgaggagacccgggtcgaggagcgcgcgctggatgataagctggccaagattcacgagagcgtggcggccccaccgttcgtcgacgtggcgcgtcgccacgcgcggtgtttggacggtgaggctgcggaggaggaggaggcggcggcggcgcggtcgttgaagtcggcattggagggcgtgctggcgaatgcgaatttgctgaggacgactctagctgccaagctggtgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

189

Amino Acids

21.57

Weight (kDa)

5.45

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 2 cut(s) 8, 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 420
AccII CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 2 cut(s) 130, 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 2 cut(s) 5, 102
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 240, 355
AgsI TTSAA 2 cut(s) 256, 499
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 3 cut(s) 379, 554, 562
AluI AGCT 3 cut(s) 379, 554, 562
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 4 cut(s) 108, 127, 286, 338
AlwI GGATC 2 cut(s) 130, 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 4 cut(s) 72, 231, 381, 405
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 79, 461, 554
ApoI RAATTY 1 cut(s) 532
AspLEI GCGC 7 cut(s) 178, 363, 365, 367, 430, 442, 490
AspS9I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 2 cut(s) 310, 319
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 88, 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 91, 448, 541
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 4 cut(s) 108, 127, 286, 338
BfaI CTAG 1 cut(s) 551
BisI GCNGC 7 cut(s) 80, 405, 462, 480, 483, 486, 555
BlsI GCNGC 7 cut(s) 81, 406, 463, 481, 484, 487, 556
Bme1390I CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
Bme18I GGWCC 2 cut(s) 310, 319
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 539
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 2 cut(s) 5, 102
BsaI GGTCTC 3 cut(s) 108, 286, 338
BsaJI CCNNGG 2 cut(s) 306, 348
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 355
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 306, 348
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 2 cut(s) 240, 355
BseMII CTCAG 1 cut(s) 530
BsePI GCGCGC 2 cut(s) 361, 363
BseRI GAGGAG 5 cut(s) 356, 371, 482, 485, 488
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 91, 448, 541
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
Bsh1285I CGRYCG 1 cut(s) 494
BshFI GGCC 4 cut(s) 74, 233, 383, 407
BsiEI CGRYCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
BslI CCNNNNNNNGG 2 cut(s) 240, 355
BsmAI GTCTC 4 cut(s) 108, 127, 286, 338
BsmBI CGTCTC 1 cut(s) 127
BsmI GAATGC 3 cut(s) 17, 269, 532
BsnI GGCC 4 cut(s) 74, 233, 383, 407
Bso31I GGTCTC 3 cut(s) 108, 286, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 51, 88, 235
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 106, 135, 243
BspANI GGCC 4 cut(s) 74, 233, 383, 407
BspCNI CTCAG 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 2 cut(s) 130, 251
BspTNI GGTCTC 3 cut(s) 108, 286, 338
BsrBI CCGCTC 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 306, 348
BssHII GCGCGC 2 cut(s) 361, 363
BssMI GATC 3 cut(s) 106, 135, 243
BssNI GRCGYC 2 cut(s) 5, 102
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 414, 455
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 2 cut(s) 5, 102
BstC8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 518, 522
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
BstHHI GCGC 7 cut(s) 178, 363, 365, 367, 430, 442, 490
BstKTI GATC 3 cut(s) 109, 138, 246
BstMAI GTCTC 4 cut(s) 108, 127, 286, 338
BstMBI GATC 3 cut(s) 106, 135, 243
BstMCI CGRYCG 1 cut(s) 494
BstMWI GCNNNNNNNGC 4 cut(s) 40, 92, 235, 485
BstNI CCWGG 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 192, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
BstV1I GCAGC 3 cut(s) 91, 448, 541
BstXI CCANNNNNNTGG 1 cut(s) 565
BsuRI GGCC 4 cut(s) 74, 233, 383, 407
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 518, 522
CfoI GCGC 7 cut(s) 178, 363, 365, 367, 430, 442, 490
Cfr13I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
Cfr42I CCGCGG 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 348
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 539
DpnI GATC 3 cut(s) 108, 137, 245
DpnII GATC 3 cut(s) 106, 135, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 88, 235
Eco31I GGTCTC 3 cut(s) 108, 286, 338
Eco47I GGWCC 2 cut(s) 310, 319
Eco88I CYCGRG 2 cut(s) 126, 348
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 88, 235
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 92
FaiI YATR 2 cut(s) 90, 156
FatI CATG 1 cut(s) 88
FauI CCCGC 3 cut(s) 104, 222, 309
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 7 cut(s) 80, 405, 462, 480, 483, 486, 555
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 2 cut(s) 88, 235
Fsp4HI GCNGC 7 cut(s) 80, 405, 462, 480, 483, 486, 555
FspBI CTAG 1 cut(s) 551
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 7 cut(s) 177, 362, 364, 366, 429, 441, 489
GluI GCNGC 7 cut(s) 80, 405, 462, 480, 483, 486, 555
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 4 cut(s) 74, 233, 383, 407
HapII CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
HgaI GACGC 1 cut(s) 419
HhaI GCGC 7 cut(s) 178, 363, 365, 367, 430, 442, 490
Hin1I GRCGYC 2 cut(s) 5, 102
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 7 cut(s) 176, 361, 363, 365, 428, 440, 488
HinP1I GCGC 7 cut(s) 176, 361, 363, 365, 428, 440, 488
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 287, 388, 547
HpaII CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 2 cut(s) 207, 286
Hpy188III TCNNGA 4 cut(s) 168, 241, 322, 392
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 5 cut(s) 104, 107, 422, 425, 435
HpyCH4III ACNGT 2 cut(s) 414, 455
HpyCH4IV ACGT 3 cut(s) 5, 102, 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 92, 235, 485
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 3 cut(s) 5, 102, 423
Hsp92I GRCGYC 2 cut(s) 5, 102
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 7 cut(s) 176, 361, 363, 365, 428, 440, 488
Kpn2I TCCGGA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 3 cut(s) 106, 135, 243
LmnI GCTCC 2 cut(s) 226, 358
Lsp1109I GCAGC 3 cut(s) 91, 448, 541
MaeI CTAG 1 cut(s) 551
MaeII ACGT 3 cut(s) 5, 102, 423
MalI GATC 3 cut(s) 108, 137, 245
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 106, 135, 243
MboII GAAGA 2 cut(s) 13, 170
MhlI GDGCHC 3 cut(s) 51, 88, 235
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 532
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 281, 541
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 308, 316
MspI CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
MspR9I CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 532
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 8 cut(s) 99, 308, 363, 365, 430, 440, 442, 490
MwoI GCNNNNNNNGC 4 cut(s) 40, 92, 235, 485
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 3 cut(s) 106, 135, 243
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NsbI TGCGCA 1 cut(s) 177
PauI GCGCGC 2 cut(s) 361, 363
PctI GAATGC 3 cut(s) 17, 269, 532
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 7 cut(s) 81, 406, 463, 481, 484, 487, 556
PleI GAGTC 2 cut(s) 281, 541
PpsI GAGTC 2 cut(s) 281, 541
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
PsyI GACNNNGTC 1 cut(s) 119
PteI GCGCGC 2 cut(s) 361, 363
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacII CCGCGG 1 cut(s) 309
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 7 cut(s) 80, 405, 462, 480, 483, 486, 555
Sau3AI GATC 3 cut(s) 106, 135, 243
Sau96I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
SchI GAGTC 2 cut(s) 281, 541
ScrFI CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
SduI GDGCHC 3 cut(s) 51, 88, 235
SetI ASST 7 cut(s) 8, 105, 120, 381, 426, 556, 564
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 2 cut(s) 310, 319
SmaI CCCGGG 1 cut(s) 350
Sse9I AATT 2 cut(s) 171, 532
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 6 cut(s) 192, 248, 259, 329, 347, 348
TaaI ACNGT 2 cut(s) 414, 455
TaiI ACGT 3 cut(s) 8, 105, 426
TaqI TCGA 7 cut(s) 12, 24, 105, 167, 339, 354, 420
TasI AATT 2 cut(s) 171, 532
TauI GCSGC 4 cut(s) 407, 482, 485, 488
TfiI GAWTC 1 cut(s) 388
TseI GCWGC 3 cut(s) 79, 461, 554
TspDTI ATGAA 2 cut(s) 105, 171
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 310, 319
XapI RAATTY 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 1 cut(s) 551
ZraI GACGTC 2 cut(s) 6, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.