Rorug03G0059300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002774
Physical Location & Seq
Forward (+)
4449604 .. 4451709
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0059300.1

Sequence Viewer

Length: 1056 bp
ATGGTTGAGGTTGAGGGAGTCCGAATTCCGAGAGTGCAACTAGGAAATCAAGGATTTGAGGTTTCCAAGTTGGGATTTGGGTGTAGACGGCTTACTGGGACATACAACGAAGCTGTAGTTAGTGAAGAGTTTGCATTATCAATCATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGACACAGCAGATCTCTATGGACCACATACCAATGAAGTTTTAGTTGGAAAGGCATTGAAGCAATTGCCTAGAGATAAAGTTCAGTTGGCTACAAAGTTTGGTATTGTAAGAATTGAGCCTGATGAAACTAGGATAATTAATGGGACTCCTGAGTATGTCCGCTCCTGTTGTGAGGCTAGCCTAAAGCGCCTTGATGTTGACTATATTGATCTTTACTATCAGCATCGCGTAGACACATCAGTTCCAATAGAGGACACTATGGGGGAACTAAAGAAGCTGGTGGAAGAGGGGAAGATAAAATATATTGGATTATCTGAAGCTAGTCCAGAAACAATTCGGAGGGCACATGCAGTTCATCCCATTACGGCTATACAAATGGAGTGGTCTCTTTGGAGTCGCGAAATTGAGGAAAAATTTGTCCCACTTTGCAGGGAACTTGGAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGATTTTTAGCTGTAGATGGTCTACCTGAAGATAGCTTTTTGCGTTCAACTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAAGGCAAAGTACAGAACTTGGCTGAAAAATATGGATGCACCCCTGCACAACTAGCACTTGCGTGGCTCATTGATCAACCCGATGTCTGCTGTGTGCCTGGCACAACCAAGACTATAAATATTGATGCTAATGTTGGTTCTGTGAGCGTGAATCTATCTAAAGAAGATATACAAGAGATATCTGAGGCAATACCTATCAATGCAGCGGCAGGGTACAGGCTACCAGACTACTTACTTTCCTGTCTTTGGCAGTTTGCAGATACACCACCAAAAGCTATCAAGCCATGCGATCAAAAGAAGCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

351

Amino Acids

39.11

Weight (kDa)

5.81

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 312 1.1e-72 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 3 cut(s) 85, 411, 676
AccII CGCG 2 cut(s) 408, 579
AciI CCGC 2 cut(s) 340, 953
AclWI GGATC 1 cut(s) 736
AcsI RAATTY 2 cut(s) 24, 593
AcuI CTGAAG 2 cut(s) 516, 702
AfaI GTAC 2 cut(s) 759, 962
AfiI CCNNNNNNNGG 1 cut(s) 993
AgsI TTSAA 3 cut(s) 238, 702, 749
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 606, 638
AleI CACNNNNGTG 1 cut(s) 808
AluBI AGCT 6 cut(s) 113, 457, 500, 665, 690, 1022
AluI AGCT 6 cut(s) 113, 457, 500, 665, 690, 1022
Alw26I GTCTC 2 cut(s) 570, 714
AlwI GGATC 1 cut(s) 736
ApeKI GCWGC 1 cut(s) 950
ApoI RAATTY 2 cut(s) 24, 593
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 962
BccI CCATC 1 cut(s) 665
BceAI ACGGC 2 cut(s) 104, 561
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 570, 714
BfaI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
BfmI CTRYAG 2 cut(s) 114, 666
BfoI RGCGCY 1 cut(s) 370
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 951, 954
BlsI GCNGC 2 cut(s) 952, 955
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 846
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 412, 773, 862
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 711, 743
BpuEI CTTGAG 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 993
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 535, 788
BseLI CCNNNNNNNGG 1 cut(s) 993
BseMII CTCAG 2 cut(s) 321, 921
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 962
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 2 cut(s) 408, 579
BslFI GGGAC 3 cut(s) 112, 337, 584
BslI CCNNNNNNNGG 1 cut(s) 993
BsmAI GTCTC 2 cut(s) 570, 714
BsmFI GGGAC 3 cut(s) 112, 337, 584
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 5 cut(s) 190, 388, 741, 820, 1036
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 2 cut(s) 340, 953
BspCNI CTCAG 2 cut(s) 322, 922
BspFNI CGCG 2 cut(s) 408, 579
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 5 cut(s) 190, 388, 741, 820, 1036
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 846
Bst6I CTCTTC 2 cut(s) 120, 459
BstC8I GCNNGC 2 cut(s) 153, 358
BstDEI CTNAG 2 cut(s) 330, 930
BstF5I GGATG 2 cut(s) 535, 788
BstFNI CGCG 2 cut(s) 408, 579
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 5 cut(s) 193, 391, 744, 823, 1039
BstMAI GTCTC 2 cut(s) 570, 714
BstMBI GATC 5 cut(s) 190, 388, 741, 820, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 366, 800
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 2 cut(s) 114, 666
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 2 cut(s) 408, 579
BstV1I GCAGC 1 cut(s) 962
BstX2I RGATCY 2 cut(s) 190, 741
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 190, 741
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 2 cut(s) 535, 788
BtuMI TCGCGA 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 153, 358
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 758, 961
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviAII CATG 2 cut(s) 527, 1032
CviQI GTAC 2 cut(s) 758, 961
DdeI CTNAG 2 cut(s) 330, 930
DpnI GATC 5 cut(s) 192, 390, 743, 822, 1038
DpnII GATC 5 cut(s) 190, 388, 741, 820, 1036
Eam1104I CTCTTC 2 cut(s) 120, 459
EarI CTCTTC 2 cut(s) 120, 459
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 516, 702
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 844
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 2 cut(s) 530, 1035
FaqI GGGAC 3 cut(s) 112, 337, 584
FatI CATG 2 cut(s) 526, 1031
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 3 cut(s) 85, 411, 676
Fnu4HI GCNGC 2 cut(s) 951, 954
FokI GGATG 2 cut(s) 522, 795
Fsp4HI GCNGC 2 cut(s) 951, 954
FspBI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 951, 954
HaeII RGCGCY 1 cut(s) 370
HhaI GCGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 530, 1035
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 4 cut(s) 18, 325, 574, 898
Hpy166II GTNNAC 4 cut(s) 86, 379, 412, 677
Hpy188I TCNGA 5 cut(s) 23, 30, 496, 519, 931
Hpy188III TCNNGA 4 cut(s) 329, 506, 578, 730
Hpy8I GTNNAC 4 cut(s) 86, 379, 412, 677
HpyAV CCTTC 1 cut(s) 755
HpyCH4V TGCA 8 cut(s) 37, 134, 530, 609, 786, 794, 950, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 800
HpyF3I CTNAG 2 cut(s) 330, 930
Hsp92II CATG 2 cut(s) 530, 1035
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 190, 388, 741, 820, 1036
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 962
LweI GCATC 3 cut(s) 412, 773, 862
MaeI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
MalI GATC 5 cut(s) 192, 390, 743, 822, 1038
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 190, 388, 741, 820, 1036
MboII GAAGA 5 cut(s) 137, 476, 484, 695, 923
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 2 cut(s) 190, 741
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 8 cut(s) 24, 242, 291, 315, 513, 582, 593, 621
MlyI GAGTC 3 cut(s) 27, 319, 583
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 210, 808
MspA1I CMGCKG 1 cut(s) 953
MspR9I CCNGG 1 cut(s) 846
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 2 cut(s) 408, 579
MwoI GCNNNNNNNGC 2 cut(s) 366, 800
NdeII GATC 5 cut(s) 190, 388, 741, 820, 1036
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 530, 1035
NruI TCGCGA 1 cut(s) 579
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 808
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 898
PkrI GCNGC 2 cut(s) 952, 955
PleI GAGTC 3 cut(s) 26, 319, 582
PpsI GAGTC 3 cut(s) 26, 319, 582
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 741
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 2 cut(s) 759, 962
RsaNI GTAC 2 cut(s) 758, 961
RseI CAYNNNNRTG 2 cut(s) 210, 808
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 951, 954
Sau3AI GATC 5 cut(s) 190, 388, 741, 820, 1036
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 3 cut(s) 27, 319, 583
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 3 cut(s) 412, 773, 862
SfcI CTRYAG 2 cut(s) 114, 666
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 210, 808
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 8 cut(s) 24, 242, 291, 315, 513, 582, 593, 621
SsiI CCGC 2 cut(s) 340, 953
SspI AATATT 1 cut(s) 868
SspMI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 646
TaqI TCGA 1 cut(s) 159
TasI AATT 8 cut(s) 24, 242, 291, 315, 513, 582, 593, 621
TatI WGTACW 1 cut(s) 757
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 1 cut(s) 898
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 1 cut(s) 950
TspDTI ATGAA 3 cut(s) 228, 318, 524
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 2 cut(s) 24, 593
XceI RCATGY 1 cut(s) 530
XmiI GTMKAC 3 cut(s) 85, 411, 676
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.