Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Forward (+)

44291584 .. 44293850

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G542200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACATACCACCCTTCTTCTTTTCAAGTCACTCTGGTTGGCTCTGCTTCGCTTATTGTCTATCCCCTCAAGGAAATGGCGGCTGCTGCTGCTAATCCAGCAAGAAAGCGGTTCATCGCGTTTCTTGGGGGCTGGTTGGAGCGTCAGCAAACCTTCCTCAATCAGCTCCTTCGTTTGGTGGATTTACCTAGCTCAGAGAACAAGGCCCACCAACAGAGGCATTTGATCGAACAAGTTCTATGCCACTACCAACAATACTTCGCAGAAAAGGCCCTGACCGCGGAGGAGGACGTTTTCGTGCTGTTCTCTCCGCCGTGGCTGAGCTCGTTCGAGCGGACCATGCTCTGGCTTGCTGGGTTCAAGCCCTCATTGGTGCTGCGCATGGTGGACAGCTCGGTGGAGGACTTGACGGCGGAGCAGGCGAGGGAGATGGAAGCGGTGAAGGGCGAGACGCGGCGGGCGGAGAGGGAGCTGTCGGAGACAATGGCGAGGATACAGGAGAGCGTGGCTGCGCCGCCGATTCTAGCGCTGGCGAGGAGAGTGGGTAGGCTGATGGACGGCGAGATTTCGTCGCTGGATTTGGCAATGGAGACGCTGAAGACGGCGATGCTGGGGGTTTTCGAGAGCGCCAACGGGCTTCGCGGGTCGACAGTGAGGAAGGTGGTGGAGGTCTTGAGCCCCGAGCAGACCGTGAAGGTTTTGGCGGCAGTTGCTCAGTTTCAACTCGGAATTAGAAGGTTGGGGTTGCAGAGAGACTCTCAGCAGCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

258

Amino Acids

28.78

Weight (kDa)

6.93

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	4 cut(s)	119, 281, 454, 642
AcuI	CTGAAG	1 cut(s)	617
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	175, 280, 345
AgsI	TTSAA	3 cut(s)	26, 361, 722
AluBI	AGCT	6 cut(s)	166, 192, 324, 393, 472, 771
AluI	AGCT	6 cut(s)	166, 192, 324, 393, 472, 771
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	4 cut(s)	443, 473, 584, 747
Ama87I	CYCGRG	1 cut(s)	680
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	2 cut(s)	204, 270
ApeKI	GCWGC	6 cut(s)	83, 86, 89, 376, 509, 763
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	4 cut(s)	381, 514, 529, 629
AspS9I	GGNCC	3 cut(s)	205, 271, 336
AsuHPI	GGTGA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	326, 680
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	5 cut(s)	70, 73, 76, 363, 496
BccI	CCATC	2 cut(s)	424, 547
BceAI	ACGGC	4 cut(s)	298, 426, 574, 618
BciVI	GTATCC	1 cut(s)	486
BcoDI	GTCTC	4 cut(s)	443, 473, 584, 747
BfaI	CTAG	2 cut(s)	189, 524
BfoI	RGCGCY	2 cut(s)	530, 630
BfuI	GTATCC	1 cut(s)	486
BlpI	GCTNAGC	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	205, 271, 336
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	742, 774
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	53, 694
BsaJI	CCNNGG	2 cut(s)	279, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 280, 345
Bse3DI	GCAATG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	279, 314
BseLI	CCNNNNNNNGG	3 cut(s)	175, 280, 345
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	207, 311, 728, 773
BseRI	GAGGAG	2 cut(s)	299, 550
BseXI	GCAGC	5 cut(s)	70, 73, 76, 363, 496
BseYI	CCCAGC	2 cut(s)	353, 610
Bsh1236I	CGCG	4 cut(s)	119, 281, 454, 642
BshFI	GGCC	2 cut(s)	206, 272
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	680
BslI	CCNNNNNNNGG	3 cut(s)	175, 280, 345
BsmAI	GTCTC	4 cut(s)	443, 473, 584, 747
BsmBI	CGTCTC	2 cut(s)	443, 584
BsnI	GGCC	2 cut(s)	206, 272
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	326, 680
Bsp143I	GATC	1 cut(s)	225
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	206, 272
BspCNI	CTCAG	4 cut(s)	206, 312, 727, 772
BspFNI	CGCG	4 cut(s)	119, 281, 454, 642
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	2 cut(s)	279, 314
BssMI	GATC	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	652, 691
BstC8I	GCNNGC	4 cut(s)	351, 420, 459, 531
BstDEI	CTNAG	4 cut(s)	193, 320, 714, 759
BstDSI	CCRYGG	2 cut(s)	279, 314
BstFNI	CGCG	4 cut(s)	119, 281, 454, 642
BstH2I	RGCGCY	2 cut(s)	530, 630
BstHHI	GCGC	4 cut(s)	381, 514, 529, 629
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	4 cut(s)	443, 473, 584, 747
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 89, 98, 269, 278, 340, 419, 710
BstUI	CGCG	4 cut(s)	119, 281, 454, 642
BstV1I	GCAGC	5 cut(s)	70, 73, 76, 363, 496
BstV2I	GAAGAC	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	206, 272
BtgI	CCRYGG	2 cut(s)	279, 314
BtgZI	GCGATG	2 cut(s)	100, 620
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	4 cut(s)	351, 420, 459, 531
CfoI	GCGC	4 cut(s)	381, 514, 529, 629
Cfr13I	GGNCC	3 cut(s)	205, 271, 336
Cfr42I	CCGCGG	1 cut(s)	282
CseI	GACGC	3 cut(s)	131, 460, 601
CviAII	CATG	2 cut(s)	340, 382
DdeI	CTNAG	4 cut(s)	193, 320, 714, 759
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EciI	GGCGGA	3 cut(s)	300, 428, 476
Ecl136II	GAGCTC	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	326, 680
Eco47I	GGWCC	1 cut(s)	336
Eco47III	AGCGCT	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	326, 680
Esp3I	CGTCTC	2 cut(s)	443, 584
FaeI	CATG	2 cut(s)	343, 385
FaiI	YATR	4 cut(s)	7, 241, 341, 383
FatI	CATG	2 cut(s)	339, 381
FauI	CCCGC	2 cut(s)	450, 635
FblI	GTMKAC	1 cut(s)	647
FriOI	GRGCYC	2 cut(s)	326, 680
FspBI	CTAG	2 cut(s)	189, 524
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	4 cut(s)	380, 513, 528, 628
GsaI	CCCAGC	2 cut(s)	357, 614
HaeII	RGCGCY	2 cut(s)	530, 630
HaeIII	GGCC	2 cut(s)	206, 272
HgaI	GACGC	3 cut(s)	131, 460, 601
HhaI	GCGC	4 cut(s)	381, 514, 529, 629
Hin1II	CATG	2 cut(s)	343, 385
Hin6I	GCGC	4 cut(s)	379, 512, 527, 627
HinP1I	GCGC	4 cut(s)	379, 512, 527, 627
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	520, 755
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	388, 648
Hpy188I	TCNGA	3 cut(s)	196, 478, 728
Hpy188III	TCNNGA	2 cut(s)	622, 673
Hpy8I	GTNNAC	2 cut(s)	388, 648
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	7 cut(s)	24, 163, 179, 436, 652, 688, 729
HpyCH4III	ACNGT	2 cut(s)	652, 691
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	748
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 89, 98, 269, 278, 340, 419, 710
HpyF3I	CTNAG	4 cut(s)	193, 320, 714, 759
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	343, 385
HspAI	GCGC	4 cut(s)	379, 512, 527, 627
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	4 cut(s)	139, 171, 415, 469
Lsp1109I	GCAGC	5 cut(s)	70, 73, 76, 363, 496
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	2 cut(s)	189, 524
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	227
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	9, 610
MhlI	GDGCHC	2 cut(s)	326, 680
MluCI	AATT	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	2 cut(s)	117, 456
MroXI	GAANNNNTTC	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	281
MvnI	CGCG	4 cut(s)	119, 281, 454, 642
MwoI	GCNNNNNNNGC	8 cut(s)	86, 89, 98, 269, 278, 340, 419, 710
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	343, 385
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	520
PflMI	CCANNNNNTGG	1 cut(s)	345
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	326
PspFI	CCCAGC	2 cut(s)	353, 610
PspPI	GGNCC	3 cut(s)	205, 271, 336
SacI	GAGCTC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	282
SalI	GTCGAC	1 cut(s)	646
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	3 cut(s)	205, 271, 336
SchI	GAGTC	1 cut(s)	749
SduI	GDGCHC	2 cut(s)	326, 680
SfaNI	GCATC	1 cut(s)	597
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	68, 673
SmoI	CTYRAG	2 cut(s)	68, 673
Sse9I	AATT	1 cut(s)	729
SspMI	CTAG	2 cut(s)	189, 524
SstI	GAGCTC	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	652, 691
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	228, 330, 621, 647
TasI	AATT	1 cut(s)	729
TauI	GCSGC	4 cut(s)	83, 457, 517, 707
TfiI	GAWTC	1 cut(s)	520
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	6 cut(s)	83, 86, 89, 376, 509, 763
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	657
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	189, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.