Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Reverse (-)

18482288 .. 18483257

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACCTTACTCTCGAAGTATCCTCACCCATTAGCATTACTTGCCCAAAAAGCAAATCAAAAACCAAAATCCCAAAAGAAATCCCCCACCTTTCGAATCCCACCTCCTATTTAATCCCACCCATCTCTCTGTTTTTCGTCGCTATTAAAACCCCAGAAAGCTTTGCTGTTTTTGTTTTGGTTATGACAAACGGTTTTCACAGCGGCAATGCGTCCAACACATTCGAGGCATTCTACGAGGGCTGGCTGGTCCGGCAAGAACACTTCCTCGATGAGCTCTTATCGGCCCAGCAGACGATCGACGAGGCCCGAGATGAAGACCTCCGAGATTTGGTGTCTCGGGTTCTCTTCCATTACCAGCAGTATTACGACGAGAAATCGCGACTTGGACAGCGGGATGTTTTACTGGTTTTCTCGCCGACGTGGTATACTTCCTACGAAAGGAGCCTGCTTTGGATCGCCGGGTACAAACCGGGTATCGTATTCCGGCTCGTGACCGAGTCGGTGCCCGATTTGAGCGACCAGCAGCGGGTCAGGATGGCCCGGCTGAGGGAGGCGACCCGGGTCGAGGAGCGCGAGCTCAACGACAAGCTCGCCAAGATTCACGAGAGCGTGGCGGCGCCGCCGTTCATGGATGCGGTGAGGCGGTACGGGAGGGCCGGCCACGGGGAGATCGTGAAGGACGACGCGGTGATCAAGTCGCTTAAGTCGGCATTGGAGACCGTGGTGGAGAATGCCAACTTGCTGAAGACGACGATGGGGACGAAGTTGGTGGATTTGCTGAGCTCGGGGCAGGCAAATTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

270

Amino Acids

30.47

Weight (kDa)

6.33

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	505, 619
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	3 cut(s)	382, 576, 689
AciI	CCGC	8 cut(s)	204, 394, 529, 617, 623, 638, 646, 689
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	2 cut(s)	467, 650
AfiI	CCNNNNNNNGG	7 cut(s)	331, 441, 529, 549, 550, 568, 666
AflII	CTTAAG	1 cut(s)	704
AjiI	CACGTC	1 cut(s)	423
AluBI	AGCT	5 cut(s)	162, 277, 580, 592, 786
AluI	AGCT	5 cut(s)	162, 277, 580, 592, 786
Alw21I	GWGCWC	3 cut(s)	279, 582, 788
Alw26I	GTCTC	2 cut(s)	342, 713
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	4 cut(s)	309, 339, 561, 787
AoxI	GGCC	5 cut(s)	285, 306, 540, 657, 661
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	799
AspLEI	GCGC	2 cut(s)	576, 622
AspS9I	GGNCC	5 cut(s)	250, 286, 307, 541, 657
AsuC2I	CCSGG	5 cut(s)	463, 474, 544, 562, 563
AsuHPI	GGTGA	3 cut(s)	18, 652, 703
AsuII	TTCGAA	1 cut(s)	95
AvaI	CYCGRG	4 cut(s)	309, 339, 561, 787
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	505, 619
BanII	GRGCYC	3 cut(s)	279, 582, 788
BauI	CACGAG	2 cut(s)	491, 605
BbsI	GAAGAC	2 cut(s)	324, 755
Bbv12I	GWGCWC	3 cut(s)	279, 582, 788
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	131, 532, 751
BceAI	ACGGC	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	5 cut(s)	463, 474, 544, 562, 563
BcoDI	GTCTC	2 cut(s)	342, 713
BfoI	RGCGCY	1 cut(s)	623
BfrI	CTTAAG	1 cut(s)	704
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	4 cut(s)	205, 527, 618, 623
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	4 cut(s)	206, 528, 619, 624
Bme1390I	CCNGG	5 cut(s)	463, 474, 544, 562, 563
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	4 cut(s)	309, 339, 561, 787
BmgBI	CACGTC	1 cut(s)	423
BmgT120I	GGNCC	5 cut(s)	250, 286, 307, 541, 657
BmiI	GGNNCC	3 cut(s)	446, 507, 621
BmrFI	CCNGG	5 cut(s)	463, 474, 544, 562, 563
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	2 cut(s)	324, 755
Bpu10I	CCTNAGC	1 cut(s)	548
Bpu1102I	GCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	5 cut(s)	463, 474, 544, 562, 563
BsaHI	GRCGYC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	561, 664, 723
Bsc4I	CCNNNNNNNGG	7 cut(s)	331, 441, 529, 549, 550, 568, 666
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	561, 664, 723
BseGI	GGATG	3 cut(s)	403, 543, 640
BseLI	CCNNNNNNNGG	7 cut(s)	331, 441, 529, 549, 550, 568, 666
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	539, 773
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	3 cut(s)	382, 576, 689
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	5 cut(s)	287, 308, 542, 659, 663
BshNI	GGYRCC	2 cut(s)	505, 619
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	3 cut(s)	279, 582, 788
BsiHKCI	CYCGRG	4 cut(s)	309, 339, 561, 787
BsiSI	CCGG	7 cut(s)	253, 462, 473, 487, 544, 562, 660
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	7 cut(s)	331, 441, 529, 549, 550, 568, 666
BsmAI	GTCTC	2 cut(s)	342, 713
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	2 cut(s)	230, 739
BsnI	GGCC	5 cut(s)	287, 308, 542, 659, 663
Bso31I	GGTCTC	1 cut(s)	713
BsoBI	CYCGRG	4 cut(s)	309, 339, 561, 787
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	4 cut(s)	279, 510, 582, 788
Bsp143I	GATC	4 cut(s)	297, 456, 672, 693
Bsp1720I	GCTNAGC	1 cut(s)	782
Bsp68I	TCGCGA	1 cut(s)	382
BspACI	CCGC	8 cut(s)	204, 394, 529, 617, 623, 638, 646, 689
BspANI	GGCC	5 cut(s)	287, 308, 542, 659, 663
BspCNI	CTCAG	2 cut(s)	540, 774
BspFNI	CGCG	3 cut(s)	382, 576, 689
BspLI	GGNNCC	3 cut(s)	446, 507, 621
BspPI	GGATC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	2 cut(s)	505, 619
BspTI	CTTAAG	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	3 cut(s)	561, 664, 723
BssMI	GATC	4 cut(s)	297, 456, 672, 693
BssNAI	GTATAC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	620
BssSI	CACGAG	2 cut(s)	491, 605
Bst1107I	GTATAC	1 cut(s)	429
Bst2BI	CACGAG	2 cut(s)	491, 605
Bst4CI	ACNGT	2 cut(s)	194, 724
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	620
BstAFI	CTTAAG	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	6 cut(s)	245, 449, 578, 594, 661, 795
BstDEI	CTNAG	2 cut(s)	548, 782
BstDSI	CCRYGG	2 cut(s)	664, 723
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	403, 543, 640
BstFNI	CGCG	3 cut(s)	382, 576, 689
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	2 cut(s)	576, 622
BstKTI	GATC	4 cut(s)	300, 459, 675, 696
BstMAI	GTCTC	2 cut(s)	342, 713
BstMBI	GATC	4 cut(s)	297, 456, 672, 693
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 51, 253
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	5 cut(s)	461, 472, 542, 560, 561
BstSLI	GKGCMC	1 cut(s)	510
BstUI	CGCG	3 cut(s)	382, 576, 689
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	2 cut(s)	324, 755
BstZ17I	GTATAC	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	5 cut(s)	287, 308, 542, 659, 663
BtgI	CCRYGG	2 cut(s)	664, 723
BtrI	CACGTC	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	403, 543, 640
BtuMI	TCGCGA	1 cut(s)	382
Cac8I	GCNNGC	6 cut(s)	245, 449, 578, 594, 661, 795
CfoI	GCGC	2 cut(s)	576, 622
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	5 cut(s)	250, 286, 307, 541, 657
Cfr9I	CCCGGG	1 cut(s)	561
CseI	GACGC	2 cut(s)	201, 695
Csp6I	GTAC	2 cut(s)	466, 649
CviAII	CATG	1 cut(s)	631
CviQI	GTAC	2 cut(s)	466, 649
DdeI	CTNAG	2 cut(s)	548, 782
DinI	GGCGCC	1 cut(s)	621
DpnI	GATC	4 cut(s)	299, 458, 674, 695
DpnII	GATC	4 cut(s)	297, 456, 672, 693
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	3 cut(s)	277, 580, 786
Eco24I	GRGCYC	3 cut(s)	279, 582, 788
Eco31I	GGTCTC	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	3 cut(s)	277, 580, 786
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	4 cut(s)	309, 339, 561, 787
EcoICRI	GAGCTC	3 cut(s)	277, 580, 786
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoT38I	GRGCYC	3 cut(s)	279, 582, 788
EgeI	GGCGCC	1 cut(s)	621
EheI	GGCGCC	1 cut(s)	621
FaeI	CATG	1 cut(s)	634
FaiI	YATR	3 cut(s)	185, 429, 632
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	1 cut(s)	630
FauI	CCCGC	2 cut(s)	387, 522
FbaI	TGATCA	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	205, 527, 618, 623
FokI	GGATG	3 cut(s)	410, 550, 647
FriOI	GRGCYC	3 cut(s)	279, 582, 788
FseI	GGCCGGCC	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	205, 527, 618, 623
GlaI	GCGC	2 cut(s)	575, 621
GluI	GCNGC	4 cut(s)	205, 527, 618, 623
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	5 cut(s)	287, 308, 542, 659, 663
HapII	CCGG	7 cut(s)	253, 462, 473, 487, 544, 562, 660
HgaI	GACGC	2 cut(s)	201, 695
HhaI	GCGC	2 cut(s)	576, 622
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	1 cut(s)	634
Hin6I	GCGC	2 cut(s)	574, 620
HinP1I	GCGC	2 cut(s)	574, 620
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	97, 500, 601
HpaII	CCGG	7 cut(s)	253, 462, 473, 487, 544, 562, 660
HphI	GGTGA	3 cut(s)	18, 652, 703
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	6 cut(s)	14, 381, 493, 535, 605, 676
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	6 cut(s)	143, 305, 374, 424, 689, 757
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	2 cut(s)	194, 724
HpyCH4IV	ACGT	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 51, 253
HpyF3I	CTNAG	2 cut(s)	548, 782
HpySE526I	ACGT	1 cut(s)	422
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	1 cut(s)	634
HspAI	GCGC	2 cut(s)	574, 620
KasI	GGCGCC	1 cut(s)	619
KroI	GCCGGC	1 cut(s)	659
KroNI	GCCGGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	297, 456, 672, 693
LmnI	GCTCC	2 cut(s)	444, 571
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	1 cut(s)	625
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	4 cut(s)	299, 458, 674, 695
MboI	GATC	4 cut(s)	297, 456, 672, 693
MboII	GAAGA	3 cut(s)	329, 340, 760
MhlI	GDGCHC	4 cut(s)	279, 510, 582, 788
MluCI	AATT	1 cut(s)	799
Mly113I	GGCGCC	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	659
MseI	TTAA	3 cut(s)	113, 147, 705
MspA1I	CMGCKG	3 cut(s)	204, 394, 529
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	7 cut(s)	253, 462, 473, 487, 544, 562, 660
MspR9I	CCNGG	5 cut(s)	463, 474, 544, 562, 563
Mva1269I	GAATGC	2 cut(s)	230, 739
MvnI	CGCG	3 cut(s)	382, 576, 689
MwoI	GCNNNNNNNGC	3 cut(s)	42, 51, 253
NaeI	GCCGGC	1 cut(s)	661
NarI	GGCGCC	1 cut(s)	620
NciI	CCSGG	5 cut(s)	463, 474, 544, 562, 563
NdeII	GATC	4 cut(s)	297, 456, 672, 693
NgoMIV	GCCGGC	1 cut(s)	659
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	3 cut(s)	446, 507, 621
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	4 cut(s)	573, 672, 681, 761
PctI	GAATGC	2 cut(s)	230, 739
PdiI	GCCGGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	97, 601
PflFI	GACNNNGTC	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	206, 528, 619, 624
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	508
PluTI	GGCGCC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	563
Psp124BI	GAGCTC	3 cut(s)	279, 582, 788
PspFI	CCCAGC	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	446, 507, 621
PspPI	GGNCC	5 cut(s)	250, 286, 307, 541, 657
PsyI	GACNNNGTC	1 cut(s)	499
PvuI	CGATCG	1 cut(s)	300
RigI	GGCCGGCC	1 cut(s)	663
RruI	TCGCGA	1 cut(s)	382
RsaI	GTAC	2 cut(s)	467, 650
RsaNI	GTAC	2 cut(s)	466, 649
SacI	GAGCTC	3 cut(s)	279, 582, 788
SaqAI	TTAA	3 cut(s)	113, 147, 705
SatI	GCNGC	4 cut(s)	205, 527, 618, 623
Sau3AI	GATC	4 cut(s)	297, 456, 672, 693
Sau96I	GGNCC	5 cut(s)	250, 286, 307, 541, 657
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	5 cut(s)	463, 474, 544, 562, 563
SduI	GDGCHC	4 cut(s)	279, 510, 582, 788
SfaNI	GCATC	1 cut(s)	625
SfoI	GGCGCC	1 cut(s)	621
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	250
SmaI	CCCGGG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	1 cut(s)	799
SsiI	CCGC	8 cut(s)	204, 394, 529, 617, 623, 638, 646, 689
SspDI	GGCGCC	1 cut(s)	619
SstI	GAGCTC	3 cut(s)	279, 582, 788
StyD4I	CCNGG	5 cut(s)	461, 472, 542, 560, 561
TaaI	ACNGT	2 cut(s)	194, 724
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	6 cut(s)	15, 95, 225, 270, 300, 567
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	1 cut(s)	799
TauI	GCSGC	3 cut(s)	207, 620, 625
TfiI	GAWTC	2 cut(s)	97, 601
Tru1I	TTAA	3 cut(s)	113, 147, 705
Tru9I	TTAA	3 cut(s)	113, 147, 705
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	17, 330, 619
TspMI	CCCGGG	1 cut(s)	561
Tth111I	GACNNNGTC	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	799
XmaI	CCCGGG	1 cut(s)	561
XmiI	GTMKAC	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.