RLG00000024831

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002774
Physical Location & Seq
Reverse (-)
39494944 .. 39495642
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024831

Sequence Viewer

Length: 699 bp
ATGACCTCATTCGAGGCATTCTTCGAGGGCTGGCTGGTTCGGCAAGAGCACTTCTTGGATGAACTCCAATCGGCCCAGCAGCAAGGCCATGAAGCCCGCGACGTCGATCTGAGAGACCTGGTCTCTCGGGTGCTGCTCCATTACCAGCAATACTATGATGAGAAATCGAGAATTGCGCAGAGAGACGTGTTTCTGGTGTTTTCTCCGACTTGGTTGACTTCGCTGGAGCGGGCCCTGCTCTGGATCGCCGGGTTCAAGCCGGGTCTGGCATTCCGGCTGGTATCGGACTCCGTACCCGACTTGTCCGAGGACCAGCGGGTCCGGATGACCCGGCTCATGGAGGAGACCCGGGTCGAGGAGCGGGCGCTGGATGATAAGCTGGCCAAGATTCACGAGAGCGTGGCGGCCCCACCGCTCGTCGACGTGGCGCGTCGCCACGCGCGGTGTTTGGACGGCGAGATTGCGGAGGAGGAGGAGTTGGCGACGCGGTCGTTGAAGTCGGCATTGGAGGGCGTGCTGGCGAATGCGAATTTGCTGAGGACCACCATAGCTACCAAGTTGGTGGAGATGCTAAGCGGTGCTCAGGCGGTTCGGTTTTTGGTCGCGGCGGCTCAGTTTCAGCTCAAGATTAGGAACTGGGGATTGGAGAGGGACGCCGCCGAGAAACAGCGGCGGTCCGGCGGAGGAGGACGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

233

Amino Acids

26.48

Weight (kDa)

5.83

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 5.4e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 3 cut(s) 229, 361, 415
AccI GTMKAC 1 cut(s) 420
AccII CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 102, 654
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 240, 337, 355
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 256, 496
AjiI CACGTC 2 cut(s) 187, 424
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 4 cut(s) 488, 520, 626, 658
AluBI AGCT 3 cut(s) 379, 551, 622
AluI AGCT 3 cut(s) 379, 551, 622
Alw21I GWGCWC 2 cut(s) 51, 583
Alw26I GTCTC 4 cut(s) 108, 127, 177, 338
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 5 cut(s) 72, 85, 231, 381, 405
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 79, 133
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 4 cut(s) 178, 367, 430, 442
AspS9I GGNCC 8 cut(s) 73, 231, 232, 310, 319, 406, 540, 675
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 4 cut(s) 310, 319, 540, 675
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 1 cut(s) 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 2 cut(s) 51, 583
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 2 cut(s) 91, 120
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 4 cut(s) 108, 127, 177, 338
BfoI RGCGCY 1 cut(s) 368
BisI GCNGC 7 cut(s) 80, 134, 405, 606, 609, 657, 671
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 7 cut(s) 81, 135, 406, 607, 610, 658, 672
Bme1390I CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
Bme18I GGWCC 4 cut(s) 310, 319, 540, 675
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 2 cut(s) 187, 424
BmgT120I GGNCC 8 cut(s) 73, 231, 232, 310, 319, 406, 540, 675
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 536, 582
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 2 cut(s) 102, 654
BsaI GGTCTC 3 cut(s) 108, 127, 338
BsaJI CCNNGG 2 cut(s) 306, 348
BsaWI WCCGGW 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 337, 355
Bse1I ACTGG 1 cut(s) 641
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 306, 348
BseGI GGATG 3 cut(s) 64, 330, 376
BseLI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BseMII CTCAG 4 cut(s) 101, 527, 596, 626
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 6 cut(s) 356, 371, 482, 485, 488, 699
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 91, 120
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 5 cut(s) 74, 87, 233, 383, 407
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 51, 583
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BsmAI GTCTC 4 cut(s) 108, 127, 177, 338
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 3 cut(s) 17, 269, 529
BsnI GGCC 5 cut(s) 74, 87, 233, 383, 407
Bso31I GGTCTC 3 cut(s) 108, 127, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 51, 235, 583
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 106, 243
Bsp1720I GCTNAGC 1 cut(s) 572
BspANI GGCC 5 cut(s) 74, 87, 233, 383, 407
BspCNI CTCAG 4 cut(s) 102, 528, 595, 625
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 1 cut(s) 251
BspTNI GGTCTC 3 cut(s) 108, 127, 338
BsrBI CCGCTC 3 cut(s) 229, 361, 415
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 2 cut(s) 306, 348
BssMI GATC 2 cut(s) 106, 243
BssNI GRCGYC 2 cut(s) 102, 654
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 693
BstACI GRCGYC 2 cut(s) 102, 654
BstC8I GCNNGC 7 cut(s) 32, 97, 231, 363, 381, 515, 519
BstDEI CTNAG 5 cut(s) 110, 536, 572, 582, 612
BstF5I GGATG 3 cut(s) 64, 330, 376
BstFNI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 4 cut(s) 178, 367, 430, 442
BstKTI GATC 2 cut(s) 109, 246
BstMAI GTCTC 4 cut(s) 108, 127, 177, 338
BstMBI GATC 2 cut(s) 106, 243
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 2 cut(s) 40, 235
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 117, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
BstV1I GCAGC 2 cut(s) 91, 120
BstXI CCANNNNNNTGG 1 cut(s) 562
BsuRI GGCC 5 cut(s) 74, 87, 233, 383, 407
BtrI CACGTC 2 cut(s) 187, 424
BtsCI GGATG 3 cut(s) 64, 330, 376
Cac8I GCNNGC 7 cut(s) 32, 97, 231, 363, 381, 515, 519
CfoI GCGC 4 cut(s) 178, 367, 430, 442
Cfr13I GGNCC 8 cut(s) 73, 231, 232, 310, 319, 406, 540, 675
Cfr9I CCCGGG 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 675
CseI GACGC 3 cut(s) 419, 493, 662
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 293
CspI CGGWCCG 1 cut(s) 675
CviAII CATG 2 cut(s) 89, 337
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 110, 536, 572, 582, 612
DpnI GATC 2 cut(s) 108, 245
DpnII GATC 2 cut(s) 106, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
EciI GGCGGA 1 cut(s) 696
Eco24I GRGCYC 1 cut(s) 235
Eco31I GGTCTC 3 cut(s) 108, 127, 338
Eco47I GGWCC 4 cut(s) 310, 319, 540, 675
Eco88I CYCGRG 2 cut(s) 126, 348
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 92, 340
FaiI YATR 4 cut(s) 90, 156, 338, 548
FaqI GGGAC 1 cut(s) 665
FatI CATG 2 cut(s) 88, 336
FauI CCCGC 4 cut(s) 104, 222, 309, 354
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 7 cut(s) 80, 134, 405, 606, 609, 657, 671
FokI GGATG 3 cut(s) 71, 337, 383
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 7 cut(s) 80, 134, 405, 606, 609, 657, 671
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 4 cut(s) 177, 366, 429, 441
GluI GCNGC 7 cut(s) 80, 134, 405, 606, 609, 657, 671
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 5 cut(s) 74, 87, 233, 383, 407
HapII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
HgaI GACGC 3 cut(s) 419, 493, 662
HhaI GCGC 4 cut(s) 178, 367, 430, 442
Hin1I GRCGYC 2 cut(s) 102, 654
Hin1II CATG 2 cut(s) 92, 340
Hin6I GCGC 4 cut(s) 176, 365, 428, 440
HinP1I GCGC 4 cut(s) 176, 365, 428, 440
HincII GTYRAC 2 cut(s) 216, 421
HindII GTYRAC 2 cut(s) 216, 421
HinfI GANTC 2 cut(s) 287, 388
HpaII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 4 cut(s) 111, 207, 286, 307
Hpy188III TCNNGA 5 cut(s) 168, 241, 322, 392, 625
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 6 cut(s) 104, 107, 422, 425, 435, 487
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 3 cut(s) 102, 186, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 235
HpyF3I CTNAG 5 cut(s) 110, 536, 572, 582, 612
HpySE526I ACGT 3 cut(s) 102, 186, 423
Hsp92I GRCGYC 2 cut(s) 102, 654
Hsp92II CATG 2 cut(s) 92, 340
HspAI GCGC 4 cut(s) 176, 365, 428, 440
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 106, 243
LmnI GCTCC 3 cut(s) 141, 226, 358
Lsp1109I GCAGC 2 cut(s) 91, 120
LweI GCATC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 117
MaeII ACGT 3 cut(s) 102, 186, 423
MalI GATC 2 cut(s) 108, 245
MbiI CCGCTC 3 cut(s) 229, 361, 415
MboI GATC 2 cut(s) 106, 243
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 51, 235, 583
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 529
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 316, 670
MspI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
MspR9I CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 529
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 6 cut(s) 99, 430, 440, 442, 487, 605
MwoI GCNNNNNNNGC 2 cut(s) 40, 235
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 2 cut(s) 106, 243
NlaIII CATG 2 cut(s) 92, 340
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NmeAIII GCCGAG 1 cut(s) 685
NsbI TGCGCA 1 cut(s) 177
PctI GAATGC 3 cut(s) 17, 269, 529
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 119, 487
PkrI GCNGC 7 cut(s) 81, 135, 406, 607, 610, 658, 672
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 8 cut(s) 73, 231, 232, 310, 319, 406, 540, 675
PsyI GACNNNGTC 2 cut(s) 119, 487
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Rsr2I CGGWCCG 1 cut(s) 675
RsrII CGGWCCG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 7 cut(s) 80, 134, 405, 606, 609, 657, 671
Sau3AI GATC 2 cut(s) 106, 243
Sau96I GGNCC 8 cut(s) 73, 231, 232, 310, 319, 406, 540, 675
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 6 cut(s) 119, 250, 261, 331, 349, 350
SduI GDGCHC 3 cut(s) 51, 235, 583
SetI ASST 8 cut(s) 8, 105, 120, 189, 381, 426, 553, 624
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 558
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 4 cut(s) 310, 319, 540, 675
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 2 cut(s) 171, 529
StyD4I CCNGG 6 cut(s) 117, 248, 259, 329, 347, 348
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 3 cut(s) 105, 189, 426
TaqI TCGA 6 cut(s) 12, 24, 105, 167, 354, 420
TasI AATT 2 cut(s) 171, 529
TauI GCSGC 5 cut(s) 407, 608, 611, 659, 673
TfiI GAWTC 1 cut(s) 388
TseI GCWGC 2 cut(s) 79, 133
TspDTI ATGAA 2 cut(s) 75, 105
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 2 cut(s) 119, 487
VpaK11BI GGWCC 4 cut(s) 310, 319, 540, 675
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.