Rmu_sc0041171.1_g000001

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041171.1
OG0002774
Physical Location & Seq
Reverse (-)
2 .. 565
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041171.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
atgacctcattcgaggcattcttcgagggctggctggttcggcaagagcactacttggacgaactccaatcggcccagcagcgagcccatgaagcccgcgacgtcgatctgcgagacctcgtctctcgggtgctgatccattaccagcaatactacgaagagaaatcgagaattgcgcagagagatgtgttcctggtgttttctccgacttggttcacttcgctggagcgggccctgctctggatcgccgggttcaagccgggtctggcattccggctggtctcggactccgtacccgacttgtccgcggaccagcgggtccggatgacccggctcatcgacgagacccgggtcgaggagcgcgcgctggatgataagctggccaagattcacgagagcgtggcggccccaccgttcgtcgacgtggcgcgtcgccaagcgcggtgtttggacggtgaggctgcggaggaggaggcggcggcgacgcggtcgttgaagtcggcattggagggcgtgctggcgaatgcgaatttgctgaggacgactctagctgccaagctggtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

188

Amino Acids

21.45

Weight (kDa)

5.47

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 420
AccII CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 2 cut(s) 130, 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 240, 355
AgsI TTSAA 2 cut(s) 256, 496
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 379, 551, 559
AluI AGCT 3 cut(s) 379, 551, 559
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 4 cut(s) 108, 127, 286, 338
AlwI GGATC 2 cut(s) 130, 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 4 cut(s) 72, 231, 381, 405
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 79, 461, 551
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 6 cut(s) 178, 363, 365, 367, 430, 442
AspS9I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 2 cut(s) 310, 319
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 88, 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 91, 448, 538
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 4 cut(s) 108, 127, 286, 338
BfaI CTAG 1 cut(s) 548
BisI GCNGC 6 cut(s) 80, 405, 462, 477, 480, 552
BlsI GCNGC 6 cut(s) 81, 406, 463, 478, 481, 553
Bme1390I CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
Bme18I GGWCC 2 cut(s) 310, 319
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 529, 561
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 536
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 3 cut(s) 108, 286, 338
BsaJI CCNNGG 2 cut(s) 306, 348
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 355
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 306, 348
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 2 cut(s) 240, 355
BseMII CTCAG 1 cut(s) 527
BsePI GCGCGC 2 cut(s) 361, 363
BseRI GAGGAG 3 cut(s) 371, 482, 485
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 91, 448, 538
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 4 cut(s) 74, 233, 383, 407
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
BslI CCNNNNNNNGG 2 cut(s) 240, 355
BsmAI GTCTC 4 cut(s) 108, 127, 286, 338
BsmBI CGTCTC 1 cut(s) 127
BsmI GAATGC 3 cut(s) 17, 269, 529
BsnI GGCC 4 cut(s) 74, 233, 383, 407
Bso31I GGTCTC 3 cut(s) 108, 286, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 51, 88, 235
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 106, 135, 243
BspANI GGCC 4 cut(s) 74, 233, 383, 407
BspCNI CTCAG 1 cut(s) 528
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 2 cut(s) 130, 251
BspTNI GGTCTC 3 cut(s) 108, 286, 338
BsrBI CCGCTC 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 306, 348
BssHII GCGCGC 2 cut(s) 361, 363
BssMI GATC 3 cut(s) 106, 135, 243
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 414, 455
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 515, 519
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
BstHHI GCGC 6 cut(s) 178, 363, 365, 367, 430, 442
BstKTI GATC 3 cut(s) 109, 138, 246
BstMAI GTCTC 4 cut(s) 108, 127, 286, 338
BstMBI GATC 3 cut(s) 106, 135, 243
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 40, 92, 235
BstNI CCWGG 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 192, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
BstV1I GCAGC 3 cut(s) 91, 448, 538
BsuRI GGCC 4 cut(s) 74, 233, 383, 407
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 515, 519
CfoI GCGC 6 cut(s) 178, 363, 365, 367, 430, 442
Cfr13I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
Cfr42I CCGCGG 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 348
CseI GACGC 2 cut(s) 419, 493
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 536
DpnI GATC 3 cut(s) 108, 137, 245
DpnII GATC 3 cut(s) 106, 135, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 88, 235
Eco31I GGTCTC 3 cut(s) 108, 286, 338
Eco47I GGWCC 2 cut(s) 310, 319
Eco88I CYCGRG 2 cut(s) 126, 348
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 88, 235
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FatI CATG 1 cut(s) 88
FauI CCCGC 3 cut(s) 104, 222, 309
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 6 cut(s) 80, 405, 462, 477, 480, 552
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 2 cut(s) 88, 235
Fsp4HI GCNGC 6 cut(s) 80, 405, 462, 477, 480, 552
FspBI CTAG 1 cut(s) 548
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 6 cut(s) 177, 362, 364, 366, 429, 441
GluI GCNGC 6 cut(s) 80, 405, 462, 477, 480, 552
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 4 cut(s) 74, 233, 383, 407
HapII CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
HgaI GACGC 2 cut(s) 419, 493
HhaI GCGC 6 cut(s) 178, 363, 365, 367, 430, 442
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 6 cut(s) 176, 361, 363, 365, 428, 440
HinP1I GCGC 6 cut(s) 176, 361, 363, 365, 428, 440
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 287, 388, 544
HpaII CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 2 cut(s) 207, 286
Hpy188III TCNNGA 4 cut(s) 168, 241, 322, 392
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 7 cut(s) 104, 107, 344, 422, 425, 435, 487
HpyCH4III ACNGT 2 cut(s) 414, 455
HpyCH4IV ACGT 2 cut(s) 102, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 92, 235
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 2 cut(s) 102, 423
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 6 cut(s) 176, 361, 363, 365, 428, 440
Kpn2I TCCGGA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 3 cut(s) 106, 135, 243
LmnI GCTCC 2 cut(s) 226, 358
Lsp1109I GCAGC 3 cut(s) 91, 448, 538
MaeI CTAG 1 cut(s) 548
MaeII ACGT 2 cut(s) 102, 423
MalI GATC 3 cut(s) 108, 137, 245
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 106, 135, 243
MboII GAAGA 2 cut(s) 13, 170
MhlI GDGCHC 3 cut(s) 51, 88, 235
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 529
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 281, 538
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 308, 316
MspI CCGG 6 cut(s) 249, 260, 274, 322, 331, 349
MspR9I CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 529
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 7 cut(s) 99, 308, 363, 365, 430, 442, 487
MwoI GCNNNNNNNGC 3 cut(s) 40, 92, 235
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 3 cut(s) 106, 135, 243
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NsbI TGCGCA 1 cut(s) 177
PauI GCGCGC 2 cut(s) 361, 363
PctI GAATGC 3 cut(s) 17, 269, 529
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 119, 487
PkrI GCNGC 6 cut(s) 81, 406, 463, 478, 481, 553
PleI GAGTC 2 cut(s) 281, 538
PpsI GAGTC 2 cut(s) 281, 538
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
PsyI GACNNNGTC 2 cut(s) 119, 487
PteI GCGCGC 2 cut(s) 361, 363
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacII CCGCGG 1 cut(s) 309
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 6 cut(s) 80, 405, 462, 477, 480, 552
Sau3AI GATC 3 cut(s) 106, 135, 243
Sau96I GGNCC 6 cut(s) 73, 231, 232, 310, 319, 406
SchI GAGTC 2 cut(s) 281, 538
ScrFI CCNGG 6 cut(s) 194, 250, 261, 331, 349, 350
SduI GDGCHC 3 cut(s) 51, 88, 235
SetI ASST 7 cut(s) 8, 105, 120, 381, 426, 553, 561
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 2 cut(s) 310, 319
SmaI CCCGGG 1 cut(s) 350
Sse9I AATT 2 cut(s) 171, 529
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 6 cut(s) 192, 248, 259, 329, 347, 348
TaaI ACNGT 2 cut(s) 414, 455
TaiI ACGT 2 cut(s) 105, 426
TaqI TCGA 7 cut(s) 12, 24, 105, 167, 339, 354, 420
TasI AATT 2 cut(s) 171, 529
TauI GCSGC 3 cut(s) 407, 479, 482
TfiI GAWTC 1 cut(s) 388
TseI GCWGC 3 cut(s) 79, 461, 551
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 2 cut(s) 119, 487
VpaK11BI GGWCC 2 cut(s) 310, 319
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 1 cut(s) 548
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.