pycom11g03470

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002774
Physical Location & Seq
Reverse (-)
2670154 .. 2670843
690 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03470.1

Sequence Viewer

Length: 690 bp
ATGGCTGCTGCTCACCCGGGCAGGGAACGGTTTGTCACGTTCCTCGGCGGCTGGCTGGACCGCCAGCAAACGTTTCTGGACCAGCTCCTTAATCTGGTCGAATCGCCGGACTACGAAAACAAGGATGCCCGAGAGAGGATCTTAATCGAACAGGTTCTGTCCCACTACCAGCAGTACTTCGCCGAGAAAGCCAGAACGGCAGAGGAGGATGTGTTCGTCTTGTTTTCGCCGCCGTGGCTCAGCTCCGTCGAGCGGAGCTTGCTCTGGTTGGCGGGATTCAAGCCGTCAATGGTGCTGCGCATGGTGGACAGCTCGGTTGAGGACTTGACGGCTGAACAGGTGAGGGAGATGGACGCGGTGAAGGGCGAGACGAGGCGGGCGGAGCGGGATCTCTCGGAAACAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCTATTCTGGCGCTGGCGAGGAGGGTGGGGAGGCTGATGGGCGGGGAGATTTCATCGCTGGATATGGCGATGGAGATGCTGAAGACGGCCATGCTGGGGGTTTTTGAGAGCGCCGATGGTCTTCGCGGGTCGACGGTGAGAAAGGTGGTGGAGGTGTTGAGTCCGGAGCAGACTGTGAAGGTTTTGGCGGCGGTGGCGCAGTTTCAATTGAGGATTAGAAGGTGGGGGTTGCAGAGGGACTCGCAGCTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

230

Amino Acids

25.91

Weight (kDa)

5.43

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 29 - 103 1e-23 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 2 cut(s) 253, 385
AccI GTMKAC 1 cut(s) 566
AccII CGCG 2 cut(s) 356, 561
AccIII TCCGGA 1 cut(s) 598
AclI AACGTT 1 cut(s) 71
AclWI GGATC 2 cut(s) 146, 396
AcoI YGGCCR 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 5 cut(s) 22, 94, 135, 252, 531
AgsI TTSAA 2 cut(s) 280, 641
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 6 cut(s) 85, 243, 258, 312, 682, 687
AluI AGCT 6 cut(s) 85, 243, 258, 312, 682, 687
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 146, 396
AlwNI CAGNNNCTG 1 cut(s) 157
Ama87I CYCGRG 2 cut(s) 16, 129
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 4 cut(s) 5, 8, 295, 679
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 5 cut(s) 300, 433, 448, 548, 634
AspS9I GGNCC 2 cut(s) 58, 79
AsuC2I CCSGG 2 cut(s) 17, 18
AsuHPI GGTGA 4 cut(s) 5, 352, 370, 583
AvaI CYCGRG 2 cut(s) 16, 129
AvaII GGWCC 2 cut(s) 58, 79
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 524, 548
BbvI GCAGC 1 cut(s) 282
BccI CCATC 4 cut(s) 343, 466, 499, 545
BceAI ACGGC 5 cut(s) 213, 217, 268, 345, 537
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BcnI CCSGG 2 cut(s) 17, 18
BcoDI GTCTC 1 cut(s) 362
BfoI RGCGCY 3 cut(s) 434, 449, 549
BglI GCCNNNNNGGC 2 cut(s) 197, 235
BisI GCNGC 9 cut(s) 6, 9, 49, 230, 296, 429, 434, 624, 680
BlpI GCTNAGC 2 cut(s) 239, 683
BlsI GCNGC 9 cut(s) 7, 10, 50, 231, 297, 430, 435, 625, 681
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 17, 18
Bme18I GGWCC 2 cut(s) 58, 79
BmeT110I CYCGRG 2 cut(s) 16, 129
BmgT120I GGNCC 2 cut(s) 58, 79
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 17, 18
BmsI GCATC 2 cut(s) 115, 501
BpiI GAAGAC 2 cut(s) 524, 548
Bpu1102I GCTNAGC 2 cut(s) 239, 683
BpuMI CCSGG 2 cut(s) 17, 18
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 16, 43, 233
BsaWI WCCGGW 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 94, 135, 252, 531
Bse8I GATNNNNATC 1 cut(s) 143
BseAI TCCGGA 1 cut(s) 598
BseDI CCNNGG 3 cut(s) 16, 43, 233
BseGI GGATG 2 cut(s) 130, 214
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 5 cut(s) 22, 94, 135, 252, 531
BseMII CTCAG 2 cut(s) 253, 674
BseRI GAGGAG 2 cut(s) 218, 469
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 2 cut(s) 356, 561
BshFI GGCC 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 16, 129
BsiSI CCGG 3 cut(s) 17, 107, 599
BslFI GGGAC 2 cut(s) 145, 686
BslI CCNNNNNNNGG 5 cut(s) 22, 94, 135, 252, 531
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 145, 686
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 16, 129
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 2 cut(s) 138, 388
Bsp1720I GCTNAGC 2 cut(s) 239, 683
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 2 cut(s) 252, 675
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 2 cut(s) 356, 561
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 2 cut(s) 146, 396
BspT107I GGYRCC 1 cut(s) 430
BsrBI CCGCTC 2 cut(s) 253, 385
BssECI CCNNGG 3 cut(s) 16, 43, 233
BssMI GATC 2 cut(s) 138, 388
BssNI GRCGYC 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 30, 571, 610
BstACI GRCGYC 1 cut(s) 431
BstC8I GCNNGC 5 cut(s) 53, 65, 260, 378, 450
BstDEI CTNAG 2 cut(s) 239, 683
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 130, 214
BstFNI CGCG 2 cut(s) 356, 561
BstH2I RGCGCY 3 cut(s) 434, 449, 549
BstHHI GCGC 5 cut(s) 300, 433, 448, 548, 634
BstKTI GATC 2 cut(s) 141, 391
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 138, 388
BstMWI GCNNNNNNNGC 6 cut(s) 188, 197, 235, 259, 382, 629
BstSCI CCNGG 2 cut(s) 15, 16
BstUI CGCG 2 cut(s) 356, 561
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 524, 548
BstX2I RGATCY 2 cut(s) 138, 388
BstYI RGATCY 2 cut(s) 138, 388
BsuRI GGCC 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 233
BtgZI GCGATG 2 cut(s) 474, 518
BtsCI GGATG 2 cut(s) 130, 214
Cac8I GCNNGC 5 cut(s) 53, 65, 260, 378, 450
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 5 cut(s) 300, 433, 448, 548, 634
Cfr13I GGNCC 2 cut(s) 58, 79
Cfr9I CCCGGG 1 cut(s) 16
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 301, 526
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 239, 683
DinI GGCGCC 1 cut(s) 432
DpnI GATC 2 cut(s) 140, 390
DpnII GATC 2 cut(s) 138, 388
EaeI YGGCCR 1 cut(s) 522
EciI GGCGGA 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 58, 79
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 2 cut(s) 16, 129
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 2 cut(s) 304, 529
FaiI YATR 3 cut(s) 302, 500, 527
FaqI GGGAC 2 cut(s) 145, 686
FatI CATG 2 cut(s) 300, 525
FauI CCCGC 5 cut(s) 265, 369, 378, 470, 554
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 9 cut(s) 6, 9, 49, 230, 296, 429, 434, 624, 680
FokI GGATG 2 cut(s) 137, 221
Fsp4HI GCNGC 9 cut(s) 6, 9, 49, 230, 296, 429, 434, 624, 680
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 5 cut(s) 299, 432, 447, 547, 633
GluI GCNGC 9 cut(s) 6, 9, 49, 230, 296, 429, 434, 624, 680
GsaI CCCAGC 1 cut(s) 533
HaeII RGCGCY 3 cut(s) 434, 449, 549
HaeIII GGCC 1 cut(s) 524
HapII CCGG 3 cut(s) 17, 107, 599
HgaI GACGC 1 cut(s) 362
HhaI GCGC 5 cut(s) 300, 433, 448, 548, 634
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 2 cut(s) 304, 529
Hin6I GCGC 5 cut(s) 298, 431, 446, 546, 632
HinP1I GCGC 5 cut(s) 298, 431, 446, 546, 632
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 5 cut(s) 101, 276, 412, 595, 674
HpaII CCGG 3 cut(s) 17, 107, 599
HphI GGTGA 4 cut(s) 5, 352, 370, 583
Hpy166II GTNNAC 2 cut(s) 307, 567
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 77, 416, 599
Hpy8I GTNNAC 2 cut(s) 307, 567
Hpy99I CGWCG 2 cut(s) 251, 571
HpyAV CCTTC 3 cut(s) 355, 607, 648
HpyCH4III ACNGT 3 cut(s) 30, 571, 610
HpyCH4IV ACGT 2 cut(s) 38, 71
HpyCH4V TGCA 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 197, 235, 259, 382, 629
HpyF3I CTNAG 2 cut(s) 239, 683
HpySE526I ACGT 2 cut(s) 38, 71
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 2 cut(s) 304, 529
HspAI GCGC 5 cut(s) 298, 431, 446, 546, 632
KasI GGCGCC 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 2 cut(s) 138, 388
LmnI GCTCC 5 cut(s) 90, 248, 255, 382, 601
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 115, 501
MaeII ACGT 2 cut(s) 38, 71
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 140, 390
MbiI CCGCTC 2 cut(s) 253, 385
MboI GATC 2 cut(s) 138, 388
MboII GAAGA 2 cut(s) 529, 548
MfeI CAATTG 1 cut(s) 641
MflI RGATCY 2 cut(s) 138, 388
MluCI AATT 1 cut(s) 641
Mly113I GGCGCC 1 cut(s) 431
MlyI GAGTC 2 cut(s) 604, 668
MroI TCCGGA 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 90, 143
MspA1I CMGCKG 1 cut(s) 682
MspI CCGG 3 cut(s) 17, 107, 599
MspR9I CCNGG 2 cut(s) 17, 18
MunI CAATTG 1 cut(s) 641
MvnI CGCG 2 cut(s) 356, 561
MwoI GCNNNNNNNGC 6 cut(s) 188, 197, 235, 259, 382, 629
NarI GGCGCC 1 cut(s) 431
NciI CCSGG 2 cut(s) 17, 18
NdeII GATC 2 cut(s) 138, 388
NlaIII CATG 2 cut(s) 304, 529
NlaIV GGNNCC 1 cut(s) 432
NmeAIII GCCGAG 2 cut(s) 24, 208
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 101, 276, 412
PkrI GCNGC 9 cut(s) 7, 10, 50, 231, 297, 430, 435, 625, 681
PleI GAGTC 2 cut(s) 603, 668
PluTI GGCGCC 1 cut(s) 434
PpsI GAGTC 2 cut(s) 603, 668
Psp1406I AACGTT 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 2 cut(s) 58, 79
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 138, 388
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SalI GTCGAC 1 cut(s) 565
SaqAI TTAA 2 cut(s) 90, 143
SatI GCNGC 9 cut(s) 6, 9, 49, 230, 296, 429, 434, 624, 680
Sau3AI GATC 2 cut(s) 138, 388
Sau96I GGNCC 2 cut(s) 58, 79
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 604, 668
ScrFI CCNGG 2 cut(s) 17, 18
SfaNI GCATC 2 cut(s) 115, 501
SfoI GGCGCC 1 cut(s) 432
SinI GGWCC 2 cut(s) 58, 79
SmaI CCCGGG 1 cut(s) 18
Sse9I AATT 1 cut(s) 641
SspDI GGCGCC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 15, 16
TaaI ACNGT 3 cut(s) 30, 571, 610
TaiI ACGT 2 cut(s) 41, 74
TaqI TCGA 4 cut(s) 99, 147, 249, 566
TasI AATT 1 cut(s) 641
TatI WGTACW 1 cut(s) 174
TauI GCSGC 5 cut(s) 51, 232, 431, 436, 626
TfiI GAWTC 3 cut(s) 101, 276, 412
Tru1I TTAA 2 cut(s) 90, 143
Tru9I TTAA 2 cut(s) 90, 143
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 5, 8, 295, 679
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 235
TspMI CCCGGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 58, 79
XmaI CCCGGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.