FvH4_6g11270

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002774
Physical Location & Seq
Forward (+)
6706581 .. 6707353
773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11270.t1

Sequence Viewer

Length: 690 bp
ATGTCATCATTTGAGACATTCTTCGAGGGCTGGCTGGTCCGGCAGGAGCACTACCTGGACGAGCTCCAGTCGGCCCAGCAGCGAGCCCACGAGGCGCGTGAAGTTGATCTCCGAGACTTGGTGTCGCGGGTGCTGCTCCATTACCAGCAATACTATGAGGAGAAATCAAGAATTGCACAGAGAGATGTGTTTATGGTGTTTTCACCCACTTGGTTCACTTCCCTGGAGCGTGCTTTGCTGTGGATAGCCGGGTTCAAACCGGGTCTGGCATTCCGGTTGGTTTCGGACTCGGTACCCGACTTGAGTGATGACCAGCGGGTCCGGGTGACCCGCCTCGTGGAGGAGACGCGGGTCGAGGAGCGGGCGCTGAATGATAAGCTGGCTAAGATTCACGAGAGCGTGGCGGCCCCACCGCTTGTCGATGTGGCGCGTCGCCACGCGCGGTATGTGGAGAGTGAGGGTGCGGAGGGGGAGGAGGAGGAGGCGGCGACGAGGTTGAAGTCGGCATTGGAAGACGTGCTGGCGGATGCGAATTTGCTGAGGACGACGGTGGCGACGAAGCTGGTGGAGATGATGAGCGGCGCTCAGGCGGTCAGGTTTTTGGTGGCGGTGGGTCAGTTTCAGCTCAAGATAAGGAGCTGGGGGTTGGAGAGAGACGCGCGGCGGTCCCGCGGCGGAAGACGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

230

Amino Acids

26.43

Weight (kDa)

6.03

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 1.4e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc65I GGTACC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 292
AccBSI CCGCTC 2 cut(s) 361, 579
AccII CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 118, 337, 340
AgsI TTSAA 2 cut(s) 256, 499
AhdI GACNNNNNGTC 1 cut(s) 121
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 54, 222
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 5 cut(s) 64, 379, 562, 625, 639
AluI AGCT 5 cut(s) 64, 379, 562, 625, 639
Alw21I GWGCWC 2 cut(s) 51, 66
Alw26I GTCTC 4 cut(s) 8, 108, 338, 648
AoxI GGCC 2 cut(s) 72, 405
ApeKI GCWGC 2 cut(s) 79, 133
ApoI RAATTY 1 cut(s) 532
Asp718I GGTACC 1 cut(s) 292
AspLEI GCGC 6 cut(s) 97, 367, 430, 442, 584, 661
AspS9I GGNCC 5 cut(s) 37, 73, 319, 406, 666
AsuC2I CCSGG 3 cut(s) 250, 261, 323
AsuHPI GGTGA 2 cut(s) 195, 337
AvaII GGWCC 3 cut(s) 37, 319, 666
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 2 cut(s) 66, 88
BauI CACGAG 3 cut(s) 89, 335, 392
BbsI GAAGAC 2 cut(s) 519, 685
Bbv12I GWGCWC 2 cut(s) 51, 66
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 91, 120
BciT130I CCWGG 2 cut(s) 56, 224
BcnI CCSGG 3 cut(s) 250, 261, 323
BcoDI GTCTC 4 cut(s) 8, 108, 338, 648
BfoI RGCGCY 2 cut(s) 368, 585
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 7 cut(s) 80, 134, 405, 486, 580, 662, 673
BlsI GCNGC 7 cut(s) 81, 135, 406, 487, 581, 663, 674
Bme1390I CCNGG 5 cut(s) 56, 224, 250, 261, 323
Bme18I GGWCC 3 cut(s) 37, 319, 666
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 5 cut(s) 37, 73, 319, 406, 666
BmiI GGNNCC 4 cut(s) 294, 320, 408, 668
BmrFI CCNGG 5 cut(s) 56, 224, 250, 261, 323
BmsI GCATC 1 cut(s) 517
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 2 cut(s) 519, 685
BplI GAGNNNNNCTC 2 cut(s) 568, 600
BpmI CTGGAG 2 cut(s) 50, 245
Bpu10I CCTNAGC 2 cut(s) 539, 585
BpuEI CTTGAG 2 cut(s) 322, 611
BpuMI CCSGG 3 cut(s) 250, 261, 323
BsaJI CCNNGG 2 cut(s) 222, 670
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 337, 340
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 56, 224
BseDI CCNNGG 2 cut(s) 222, 670
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 118, 337, 340
BseMII CTCAG 2 cut(s) 530, 599
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 6 cut(s) 173, 356, 371, 488, 491, 494
BseXI GCAGC 2 cut(s) 91, 120
BseYI CCCAGC 2 cut(s) 75, 639
Bsh1236I CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
BshFI GGCC 2 cut(s) 74, 407
BshNI GGYRCC 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 51, 66
BsiSI CCGG 5 cut(s) 40, 249, 260, 274, 322
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 3 cut(s) 118, 337, 340
BsmAI GTCTC 4 cut(s) 8, 108, 338, 648
BsmBI CGTCTC 2 cut(s) 338, 648
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 74, 407
Bsp1286I GDGCHC 3 cut(s) 51, 66, 88
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 2 cut(s) 74, 407
BspCNI CTCAG 2 cut(s) 531, 598
BspFNI CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
BspLI GGNNCC 4 cut(s) 294, 320, 408, 668
BspT107I GGYRCC 1 cut(s) 292
BsrBI CCGCTC 2 cut(s) 361, 579
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 222, 670
BssMI GATC 1 cut(s) 106
BssSI CACGAG 3 cut(s) 89, 335, 392
Bst2BI CACGAG 3 cut(s) 89, 335, 392
Bst2UI CCWGG 2 cut(s) 56, 224
Bst4CI ACNGT 2 cut(s) 550, 684
BstC8I GCNNGC 6 cut(s) 32, 84, 231, 363, 381, 522
BstDEI CTNAG 3 cut(s) 384, 539, 585
BstDSI CCRYGG 1 cut(s) 670
BstEII GGTNACC 1 cut(s) 325
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
BstH2I RGCGCY 2 cut(s) 368, 585
BstHHI GCGC 6 cut(s) 97, 367, 430, 442, 584, 661
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 4 cut(s) 8, 108, 338, 648
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 40, 92, 133, 235
BstNI CCWGG 2 cut(s) 56, 224
BstPAI GACNNNNGTC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 5 cut(s) 54, 222, 248, 259, 321
BstUI CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
BstV1I GCAGC 2 cut(s) 91, 120
BstV2I GAAGAC 2 cut(s) 519, 685
BsuRI GGCC 2 cut(s) 74, 407
BtgI CCRYGG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 6 cut(s) 32, 84, 231, 363, 381, 522
CfoI GCGC 6 cut(s) 97, 367, 430, 442, 584, 661
Cfr13I GGNCC 5 cut(s) 37, 73, 319, 406, 666
Cfr42I CCGCGG 1 cut(s) 673
CseI GACGC 3 cut(s) 355, 419, 665
Csp6I GTAC 1 cut(s) 293
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 3 cut(s) 384, 539, 585
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DrdI GACNNNNNNGTC 1 cut(s) 317
DriI GACNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1105I GACNNNNNGTC 1 cut(s) 121
EciI GGCGGA 2 cut(s) 539, 690
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 88
Eco47I GGWCC 3 cut(s) 37, 319, 666
Eco53kI GAGCTC 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 54, 222
EcoT38I GRGCYC 2 cut(s) 66, 88
Esp3I CGTCTC 2 cut(s) 338, 648
FaiI YATR 3 cut(s) 156, 194, 447
FaqI GGGAC 1 cut(s) 652
FauI CCCGC 6 cut(s) 120, 309, 338, 342, 354, 677
Fnu4HI GCNGC 7 cut(s) 80, 134, 405, 486, 580, 662, 673
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 66, 88
Fsp4HI GCNGC 7 cut(s) 80, 134, 405, 486, 580, 662, 673
GlaI GCGC 6 cut(s) 96, 366, 429, 441, 583, 660
GluI GCNGC 7 cut(s) 80, 134, 405, 486, 580, 662, 673
GsaI CCCAGC 2 cut(s) 79, 643
GsuI CTGGAG 2 cut(s) 50, 245
HaeII RGCGCY 2 cut(s) 368, 585
HaeIII GGCC 2 cut(s) 74, 407
HapII CCGG 5 cut(s) 40, 249, 260, 274, 322
HgaI GACGC 3 cut(s) 355, 419, 665
HhaI GCGC 6 cut(s) 97, 367, 430, 442, 584, 661
Hin6I GCGC 6 cut(s) 95, 365, 428, 440, 582, 659
HinP1I GCGC 6 cut(s) 95, 365, 428, 440, 582, 659
HinfI GANTC 2 cut(s) 287, 388
HpaII CCGG 5 cut(s) 40, 249, 260, 274, 322
HphI GGTGA 2 cut(s) 195, 337
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 113, 286
Hpy188III TCNNGA 3 cut(s) 168, 392, 628
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 4 cut(s) 435, 493, 550, 559
HpyCH4III ACNGT 2 cut(s) 550, 684
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 92, 133, 235
HpyF3I CTNAG 3 cut(s) 384, 539, 585
HpySE526I ACGT 1 cut(s) 516
HspAI GCGC 6 cut(s) 95, 365, 428, 440, 582, 659
KpnI GGTACC 1 cut(s) 296
KspI CCGCGG 1 cut(s) 673
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 6 cut(s) 46, 69, 141, 226, 358, 636
Lsp1109I GCAGC 2 cut(s) 91, 120
LweI GCATC 1 cut(s) 517
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 108
MbiI CCGCTC 2 cut(s) 361, 579
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 13, 524, 690
MhlI GDGCHC 3 cut(s) 51, 66, 88
MluCI AATT 2 cut(s) 171, 532
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 316, 672
MspI CCGG 5 cut(s) 40, 249, 260, 274, 322
MspR9I CCNGG 5 cut(s) 56, 224, 250, 261, 323
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 56, 224
MvnI CGCG 9 cut(s) 97, 127, 349, 430, 440, 442, 659, 661, 672
MwoI GCNNNNNNNGC 4 cut(s) 40, 92, 133, 235
NciI CCSGG 3 cut(s) 250, 261, 323
NdeII GATC 1 cut(s) 106
NlaIV GGNNCC 4 cut(s) 294, 320, 408, 668
NmuCI GTSAC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 551, 554
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 7 cut(s) 81, 135, 406, 487, 581, 663, 674
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 54, 222
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 75, 639
PspGI CCWGG 2 cut(s) 54, 222
PspN4I GGNNCC 4 cut(s) 294, 320, 408, 668
PspPI GGNCC 5 cut(s) 37, 73, 319, 406, 666
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 673
SatI GCNGC 7 cut(s) 80, 134, 405, 486, 580, 662, 673
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 5 cut(s) 37, 73, 319, 406, 666
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 5 cut(s) 56, 224, 250, 261, 323
SduI GDGCHC 3 cut(s) 51, 66, 88
SetI ASST 9 cut(s) 57, 66, 381, 497, 519, 564, 599, 627, 641
SfaNI GCATC 1 cut(s) 517
Sfr303I CCGCGG 1 cut(s) 673
SgrBI CCGCGG 1 cut(s) 673
SinI GGWCC 3 cut(s) 37, 319, 666
SmlI CTYRAG 2 cut(s) 301, 626
SmoI CTYRAG 2 cut(s) 301, 626
Sse9I AATT 2 cut(s) 171, 532
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 5 cut(s) 54, 222, 248, 259, 321
TaaI ACNGT 2 cut(s) 550, 684
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 24, 354, 420
TasI AATT 2 cut(s) 171, 532
TauI GCSGC 5 cut(s) 407, 488, 582, 664, 675
TfiI GAWTC 1 cut(s) 388
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 79, 133
Tsp45I GTSAC 1 cut(s) 325
VpaK11BI GGWCC 3 cut(s) 37, 319, 666
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.