Prupe.6G279300_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002774
Physical Location & Seq
Reverse (-)
26167702 .. 26168445
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G279300.1

Sequence Viewer

Length: 744 bp
ATGACTAACAGGTCCGACAGCGGCTCAATATCAAACATATTCGGGGCATTCTTTGAAGCCTGGCTGGTTCGCCAAGAACATTTCTTAGACGAACTTCTCTCGGCCCAACAACGAATCAATGAAGCCCGAGACGAAGACCAAAGAGATTTGGTGTATCGGGTTCTTCTTCATTATCAGCAGTACTATGACGAAAAATCGAGGATTGCCCAGCGCGATGTTTTCCTAGTGTTTTCTCCCCCGTGGTTCACTTCGTTCGAAAGGTCCCTGCTTTGGATCGCCGGGTACAAACCGGGTCTCGCATTCCGGCTCCTGACCGAGTCGGTGCCCGATTTGAGCGACGGGCAGCGGGTCAGGATGGCCCGGCTGATGGAGGAGACCCGGGTGGAGGAGCGCGCGCTCAACGACAAGCTGGCGAAGATTCACGAGAGCGTGGCGGCGCCGCCGCTGGTGGATGTGGCGCGGCGGTACGGGAGGTTCGCGAACGGCGAGATCGTGGAGGAGGACGTGGCGATCGACGAGTTGAAATCGGCATTGGAGTCTGTGCTGGAGAATTCGAACTTGCTGAGAACGACGATGGCGACAAAGCTGGTGGATATGCTGAGCTCGGCTCAGGCGGTGAGGTTTTTGGCGGCGGTGGTGCAGTTTCAGCTGAAGATTAGGAGTTTGGGTTTGGAGCGAGACGCCGACAAACAGAGGGAATTGAATGGCGGCGGTGGTGGTAGGAGCCCAATTGGTAATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

248

Amino Acids

28.18

Weight (kDa)

5.42

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccB1I GGYRCC 2 cut(s) 322, 436
AccII CGCG 5 cut(s) 213, 393, 395, 460, 479
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 2 cut(s) 437, 681
AfaI GTAC 3 cut(s) 182, 284, 467
AfiI CCNNNNNNNGG 3 cut(s) 270, 367, 385
AgsI TTSAA 3 cut(s) 56, 523, 703
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 4 cut(s) 409, 586, 603, 649
AluI AGCT 4 cut(s) 409, 586, 603, 649
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 4 cut(s) 123, 299, 368, 672
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 2 cut(s) 126, 378
AoxI GGCC 2 cut(s) 102, 357
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 550
AspLEI GCGC 6 cut(s) 213, 393, 395, 397, 439, 460
AspS9I GGNCC 4 cut(s) 12, 103, 261, 358
AsuC2I CCSGG 5 cut(s) 280, 291, 361, 379, 380
AsuHPI GGTGA 1 cut(s) 628
AsuII TTCGAA 2 cut(s) 255, 554
AvaI CYCGRG 2 cut(s) 126, 378
AvaII GGWCC 2 cut(s) 12, 261
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 2 cut(s) 322, 436
BanII GRGCYC 2 cut(s) 605, 728
BauI CACGAG 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 349, 361, 568
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 5 cut(s) 280, 291, 361, 379, 380
BcoDI GTCTC 4 cut(s) 123, 299, 368, 672
BfaI CTAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 8 cut(s) 22, 344, 435, 440, 443, 461, 630, 709
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 8 cut(s) 23, 345, 436, 441, 444, 462, 631, 710
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 6 cut(s) 61, 280, 291, 361, 379, 380
Bme18I GGWCC 2 cut(s) 12, 261
BmeT110I CYCGRG 2 cut(s) 126, 378
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 4 cut(s) 12, 103, 261, 358
BmiI GGNNCC 5 cut(s) 263, 308, 324, 438, 725
BmrFI CCNGG 6 cut(s) 61, 280, 291, 361, 379, 380
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpmI CTGGAG 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 2 cut(s) 255, 554
BpuMI CCSGG 5 cut(s) 280, 291, 361, 379, 380
BsaHI GRCGYC 2 cut(s) 437, 681
BsaI GGTCTC 2 cut(s) 299, 368
BsaJI CCNNGG 2 cut(s) 239, 378
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 367, 385
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 239, 378
BseGI GGATG 2 cut(s) 360, 457
BseLI CCNNNNNNNGG 3 cut(s) 270, 367, 385
BseMII CTCAG 3 cut(s) 554, 590, 623
BsePI GCGCGC 2 cut(s) 391, 393
BseRI GAGGAG 3 cut(s) 386, 401, 512
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 5 cut(s) 213, 393, 395, 460, 479
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 2 cut(s) 104, 359
BshNI GGYRCC 2 cut(s) 322, 436
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 2 cut(s) 126, 378
BsiSI CCGG 5 cut(s) 279, 290, 304, 361, 379
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 270, 367, 385
BsmAI GTCTC 4 cut(s) 123, 299, 368, 672
BsmBI CGTCTC 2 cut(s) 123, 672
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 2 cut(s) 47, 299
BsnI GGCC 2 cut(s) 104, 359
Bso31I GGTCTC 2 cut(s) 299, 368
BsoBI CYCGRG 2 cut(s) 126, 378
Bsp119I TTCGAA 2 cut(s) 255, 554
Bsp1286I GDGCHC 3 cut(s) 327, 605, 728
Bsp143I GATC 3 cut(s) 273, 489, 510
Bsp1720I GCTNAGC 1 cut(s) 599
Bsp68I TCGCGA 1 cut(s) 479
BspANI GGCC 2 cut(s) 104, 359
BspCNI CTCAG 3 cut(s) 555, 591, 622
BspFNI CGCG 5 cut(s) 213, 393, 395, 460, 479
BspLI GGNNCC 5 cut(s) 263, 308, 324, 438, 725
BspPI GGATC 1 cut(s) 281
BspT104I TTCGAA 2 cut(s) 255, 554
BspT107I GGYRCC 2 cut(s) 322, 436
BspTNI GGTCTC 2 cut(s) 299, 368
BssECI CCNNGG 2 cut(s) 239, 378
BssHII GCGCGC 2 cut(s) 391, 393
BssMI GATC 3 cut(s) 273, 489, 510
BssNI GRCGYC 2 cut(s) 437, 681
BssSI CACGAG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 61
BstACI GRCGYC 2 cut(s) 437, 681
BstBI TTCGAA 2 cut(s) 255, 554
BstC8I GCNNGC 3 cut(s) 393, 395, 411
BstDEI CTNAG 4 cut(s) 85, 563, 599, 609
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 360, 457
BstFNI CGCG 5 cut(s) 213, 393, 395, 460, 479
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 6 cut(s) 213, 393, 395, 397, 439, 460
BstKTI GATC 3 cut(s) 276, 492, 513
BstMAI GTCTC 4 cut(s) 123, 299, 368, 672
BstMBI GATC 3 cut(s) 273, 489, 510
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 646
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 6 cut(s) 59, 278, 289, 359, 377, 378
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 5 cut(s) 213, 393, 395, 460, 479
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 104, 359
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 2 cut(s) 360, 457
BtuMI TCGCGA 1 cut(s) 479
Cac8I GCNNGC 3 cut(s) 393, 395, 411
CfoI GCGC 6 cut(s) 213, 393, 395, 397, 439, 460
Cfr13I GGNCC 4 cut(s) 12, 103, 261, 358
Cfr9I CCCGGG 1 cut(s) 378
CseI GACGC 1 cut(s) 689
Csp6I GTAC 3 cut(s) 181, 283, 466
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviQI GTAC 3 cut(s) 181, 283, 466
DdeI CTNAG 4 cut(s) 85, 563, 599, 609
DinI GGCGCC 1 cut(s) 438
DpnI GATC 3 cut(s) 275, 491, 512
DpnII GATC 3 cut(s) 273, 489, 510
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 603
Eco24I GRGCYC 2 cut(s) 605, 728
Eco31I GGTCTC 2 cut(s) 299, 368
Eco47I GGWCC 2 cut(s) 12, 261
Eco53kI GAGCTC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 2 cut(s) 126, 378
EcoICRI GAGCTC 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 59
EcoT38I GRGCYC 2 cut(s) 605, 728
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
Esp3I CGTCTC 2 cut(s) 123, 672
FaiI YATR 3 cut(s) 38, 186, 596
FaqI GGGAC 1 cut(s) 247
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 8 cut(s) 22, 344, 435, 440, 443, 461, 630, 709
FokI GGATG 2 cut(s) 367, 464
FriOI GRGCYC 2 cut(s) 605, 728
Fsp4HI GCNGC 8 cut(s) 22, 344, 435, 440, 443, 461, 630, 709
FspBI CTAG 1 cut(s) 224
GlaI GCGC 6 cut(s) 212, 392, 394, 396, 438, 459
GluI GCNGC 8 cut(s) 22, 344, 435, 440, 443, 461, 630, 709
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 566
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 2 cut(s) 104, 359
HapII CCGG 5 cut(s) 279, 290, 304, 361, 379
HgaI GACGC 1 cut(s) 689
HhaI GCGC 6 cut(s) 213, 393, 395, 397, 439, 460
Hin1I GRCGYC 2 cut(s) 437, 681
Hin6I GCGC 6 cut(s) 211, 391, 393, 395, 437, 458
HinP1I GCGC 6 cut(s) 211, 391, 393, 395, 437, 458
HinfI GANTC 4 cut(s) 114, 317, 418, 536
HpaII CCGG 5 cut(s) 279, 290, 304, 361, 379
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 310, 352, 422, 478
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 3 cut(s) 341, 518, 574
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 646
HpyF3I CTNAG 4 cut(s) 85, 563, 599, 609
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 2 cut(s) 437, 681
HspAI GCGC 6 cut(s) 211, 391, 393, 395, 437, 458
KasI GGCGCC 1 cut(s) 436
Kzo9I GATC 3 cut(s) 273, 489, 510
LmnI GCTCC 4 cut(s) 312, 388, 673, 723
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 504
MalI GATC 3 cut(s) 275, 491, 512
MboI GATC 3 cut(s) 273, 489, 510
MboII GAAGA 5 cut(s) 146, 155, 158, 427, 664
MfeI CAATTG 1 cut(s) 729
MhlI GDGCHC 3 cut(s) 327, 605, 728
MluCI AATT 4 cut(s) 550, 698, 729, 736
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 2 cut(s) 326, 545
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 8 cut(s) 192, 364, 379, 465, 490, 493, 612, 687
MspA1I CMGCKG 4 cut(s) 21, 346, 445, 649
MspI CCGG 5 cut(s) 279, 290, 304, 361, 379
MspR9I CCNGG 6 cut(s) 61, 280, 291, 361, 379, 380
MunI CAATTG 1 cut(s) 729
Mva1269I GAATGC 2 cut(s) 47, 299
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 5 cut(s) 213, 393, 395, 460, 479
MwoI GCNNNNNNNGC 1 cut(s) 646
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 5 cut(s) 280, 291, 361, 379, 380
NdeII GATC 3 cut(s) 273, 489, 510
NlaIV GGNNCC 5 cut(s) 263, 308, 324, 438, 725
NmeAIII GCCGAG 2 cut(s) 80, 584
NruI TCGCGA 1 cut(s) 479
NspV TTCGAA 2 cut(s) 255, 554
PauI GCGCGC 2 cut(s) 391, 393
PcsI WCGNNNNNNNCGW 4 cut(s) 483, 489, 510, 575
PctI GAATGC 2 cut(s) 47, 299
PfeI GAWTC 2 cut(s) 114, 418
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 8 cut(s) 23, 345, 436, 441, 444, 462, 631, 710
Ple19I CGATCG 1 cut(s) 513
PleI GAGTC 2 cut(s) 325, 544
PluTI GGCGCC 1 cut(s) 440
PpsI GAGTC 2 cut(s) 325, 544
PpuMI RGGWCCY 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 5 cut(s) 263, 308, 324, 438, 725
PspPI GGNCC 4 cut(s) 12, 103, 261, 358
PspPPI RGGWCCY 1 cut(s) 261
PsrI GAACNNNNNNTAC 2 cut(s) 458, 490
PsyI GACNNNGTC 1 cut(s) 316
PteI GCGCGC 2 cut(s) 391, 393
PvuI CGATCG 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 649
RruI TCGCGA 1 cut(s) 479
RsaI GTAC 3 cut(s) 182, 284, 467
RsaNI GTAC 3 cut(s) 181, 283, 466
SacI GAGCTC 1 cut(s) 605
SatI GCNGC 8 cut(s) 22, 344, 435, 440, 443, 461, 630, 709
Sau3AI GATC 3 cut(s) 273, 489, 510
Sau96I GGNCC 4 cut(s) 12, 103, 261, 358
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 326, 545
ScrFI CCNGG 6 cut(s) 61, 280, 291, 361, 379, 380
SduI GDGCHC 3 cut(s) 327, 605, 728
SetI ASST 9 cut(s) 14, 263, 411, 476, 507, 588, 605, 623, 651
SfoI GGCGCC 1 cut(s) 438
SfuI TTCGAA 2 cut(s) 255, 554
SinI GGWCC 2 cut(s) 12, 261
SmaI CCCGGG 1 cut(s) 380
Sse9I AATT 4 cut(s) 550, 698, 729, 736
SspDI GGCGCC 1 cut(s) 436
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 6 cut(s) 59, 278, 289, 359, 377, 378
TaiI ACGT 1 cut(s) 507
TaqI TCGA 4 cut(s) 197, 255, 513, 554
TaqII GACCGA 1 cut(s) 329
TasI AATT 4 cut(s) 550, 698, 729, 736
TatI WGTACW 1 cut(s) 180
TauI GCSGC 7 cut(s) 24, 437, 442, 445, 463, 632, 711
TfiI GAWTC 2 cut(s) 114, 418
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 135, 158
TspMI CCCGGG 1 cut(s) 378
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 12, 261
XapI RAATTY 1 cut(s) 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 735
XmaI CCCGGG 1 cut(s) 378
XspI CTAG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.