Rmu_ssc0000471.1_g000006

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000471.1
OG0002774
Physical Location & Seq
Forward (+)
15084 .. 16855
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000471.1_g000006.1.cds

Sequence Viewer

Length: 639 bp
ctgctctgcttcagtcaaagacgacgacgacgacgaccgtcagaggcatttgatcgaacaggttctgtgccactaccagcactacttccacgagaaatcccgcaccgccgaggaggacgttttcttcattttctctcctccctcgagcgcgccttgctctggctcgccggcttcaagccctcgatgattctacgcatggtcgagacctccgttcaggacttgaaaccggaccaggggagggagctggaggagaaaatggcgaggattcaggagagcgtggcggcgccgccgattctggagacggcgagcagagtggggaggttgatggaaggtgagatttcgacgttggatgaggcgatggaggcgctgaaggcgaagatgctgagagcgccgacggacttcgtgggtctacggcgaggaaggtggatgactggtggatctgcaaagcgaaacacccaagcttatctcttaggcagggttctcacacacaagcctattgatttacatgatctgaggttgcatcttctttggatttgggtcctaggaaaggggtttagggttcaagagaagaaagaaaagcttatgttttcctctgaagatcgtggttataagcagaagatgtttcgtggtggcccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

212

Amino Acids

24.41

Weight (kDa)

10.73

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 409
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 101, 106, 281, 287
AclWI GGATC 1 cut(s) 445
AcuI CTGAAG 2 cut(s) 389, 615
AcyI GRCGYC 1 cut(s) 284
AfiI CCNNNNNNNGG 4 cut(s) 159, 233, 238, 547
AgsI TTSAA 3 cut(s) 175, 223, 563
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 3 cut(s) 244, 461, 580
AluI AGCT 3 cut(s) 244, 461, 580
Alw26I GTCTC 2 cut(s) 197, 293
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 61
AspA2I CCTAGG 1 cut(s) 541
AspLEI GCGC 5 cut(s) 150, 152, 286, 367, 391
AspS9I GGNCC 3 cut(s) 229, 538, 632
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 2 cut(s) 229, 538
AvrII CCTAGG 1 cut(s) 541
BanI GGYRCC 1 cut(s) 283
BauI CACGAG 1 cut(s) 90
BccI CCATC 2 cut(s) 319, 352
BceAI ACGGC 2 cut(s) 318, 428
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 197, 293
BfaI CTAG 1 cut(s) 542
BfoI RGCGCY 3 cut(s) 287, 368, 392
BisI GCNGC 2 cut(s) 282, 287
BlnI CCTAGG 1 cut(s) 541
BlsI GCNGC 2 cut(s) 283, 288
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 229, 538
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 229, 538, 632
BmiI GGNNCC 2 cut(s) 285, 539
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 369, 529
BoxI GACNNNNGTC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 266, 317
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 109, 232, 541
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 233, 238, 547
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 109, 232, 541
BseGI GGATG 2 cut(s) 355, 432
BseLI CCNNNNNNNGG 4 cut(s) 159, 233, 238, 547
BseMII CTCAG 2 cut(s) 374, 503
BseNI ACTGG 1 cut(s) 436
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 126, 127, 263
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 168, 227
BslI CCNNNNNNNGG 4 cut(s) 159, 233, 238, 547
BsmAI GTCTC 2 cut(s) 197, 293
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 4 cut(s) 52, 437, 508, 598
BspACI CCGC 4 cut(s) 101, 106, 281, 287
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 2 cut(s) 375, 504
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 285, 539
BspPI GGATC 1 cut(s) 445
BspT107I GGYRCC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 109, 232, 541
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 4 cut(s) 52, 437, 508, 598
BssNI GRCGYC 1 cut(s) 284
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 4 cut(s) 150, 165, 169, 307
BstDEI CTNAG 4 cut(s) 383, 469, 512, 636
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 2 cut(s) 355, 432
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 3 cut(s) 287, 368, 392
BstHHI GCGC 5 cut(s) 150, 152, 286, 367, 391
BstKTI GATC 4 cut(s) 55, 440, 511, 601
BstMAI GTCTC 2 cut(s) 197, 293
BstMBI GATC 4 cut(s) 52, 437, 508, 598
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 4 cut(s) 154, 362, 371, 388
BstNI CCWGG 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 1 cut(s) 633
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 355, 432
Cac8I GCNNGC 4 cut(s) 150, 165, 169, 307
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 5 cut(s) 150, 152, 286, 367, 391
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 229, 538, 632
CviAII CATG 2 cut(s) 196, 506
CviJI RGCY 8 cut(s) 163, 171, 178, 244, 461, 493, 580, 633
CviKI_1 RGCY 8 cut(s) 163, 171, 178, 244, 461, 493, 580, 633
DdeI CTNAG 4 cut(s) 383, 469, 512, 636
DinI GGCGCC 1 cut(s) 285
DpnI GATC 4 cut(s) 54, 439, 510, 600
DpnII GATC 4 cut(s) 52, 437, 508, 598
Eco130I CCWWGG 1 cut(s) 541
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 229, 538
Eco57I CTGAAG 2 cut(s) 389, 615
Eco88I CYCGRG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 541
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 2 cut(s) 199, 509
FaiI YATR 4 cut(s) 197, 507, 584, 609
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FatI CATG 2 cut(s) 195, 505
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 282, 287
FokI GGATG 2 cut(s) 362, 439
Fsp4HI GCNGC 2 cut(s) 282, 287
FspBI CTAG 1 cut(s) 542
GlaI GCGC 5 cut(s) 149, 151, 285, 366, 390
GluI GCNGC 2 cut(s) 282, 287
GsuI CTGGAG 2 cut(s) 266, 317
HaeII RGCGCY 3 cut(s) 287, 368, 392
HaeIII GGCC 1 cut(s) 633
HapII CCGG 2 cut(s) 168, 227
HhaI GCGC 5 cut(s) 150, 152, 286, 367, 391
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 2 cut(s) 199, 509
Hin6I GCGC 5 cut(s) 148, 150, 284, 365, 389
HinP1I GCGC 5 cut(s) 148, 150, 284, 365, 389
HindIII AAGCTT 2 cut(s) 459, 578
HinfI GANTC 3 cut(s) 187, 265, 292
HpaII CCGG 2 cut(s) 168, 227
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 3 cut(s) 43, 513, 595
Hpy188III TCNNGA 5 cut(s) 202, 215, 269, 296, 563
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 6 cut(s) 27, 30, 33, 36, 346, 397
HpyAV CCTTC 3 cut(s) 323, 364, 414
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 2 cut(s) 118, 344
HpyCH4V TGCA 2 cut(s) 443, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 362, 371, 388
HpyF3I CTNAG 4 cut(s) 383, 469, 512, 636
HpySE526I ACGT 2 cut(s) 118, 344
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 199, 509
HspAI GCGC 5 cut(s) 148, 150, 284, 365, 389
KasI GGCGCC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 4 cut(s) 52, 437, 508, 598
LmnI GCTCC 1 cut(s) 241
LweI GCATC 2 cut(s) 369, 529
MaeI CTAG 1 cut(s) 542
MaeII ACGT 2 cut(s) 118, 344
MalI GATC 4 cut(s) 54, 439, 510, 600
MboI GATC 4 cut(s) 52, 437, 508, 598
MboII GAAGA 6 cut(s) 116, 388, 515, 580, 608, 628
MflI RGATCY 1 cut(s) 437
Mly113I GGCGCC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 327
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 61
MspI CCGG 2 cut(s) 168, 227
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 154, 362, 371, 388
NaeI GCCGGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 284
NdeII GATC 4 cut(s) 52, 437, 508, 598
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 2 cut(s) 199, 509
NlaIV GGNNCC 2 cut(s) 285, 539
NmeAIII GCCGAG 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 143
PauI GCGCGC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 3 cut(s) 28, 31, 207
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 187, 265, 292
PkrI GCNGC 2 cut(s) 283, 288
PluTI GGCGCC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 538
PshAI GACNNNNGTC 1 cut(s) 37
PsiI TTATAA 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 285, 539
PspPI GGNCC 3 cut(s) 229, 538, 632
PspPPI RGGWCCY 1 cut(s) 538
PspXI VCTCGAGB 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 437
PteI GCGCGC 1 cut(s) 148
SatI GCNGC 2 cut(s) 282, 287
Sau3AI GATC 4 cut(s) 52, 437, 508, 598
Sau96I GGNCC 3 cut(s) 229, 538, 632
ScrFI CCNGG 1 cut(s) 233
SfaNI GCATC 2 cut(s) 369, 529
SfoI GGCGCC 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 2 cut(s) 229, 538
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 4 cut(s) 101, 106, 281, 287
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 2 cut(s) 121, 347
TaqI TCGA 5 cut(s) 55, 144, 182, 201, 341
TauI GCSGC 2 cut(s) 284, 289
TfiI GAWTC 3 cut(s) 187, 265, 292
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 2 cut(s) 199, 410
VpaK11BI GGWCC 2 cut(s) 229, 538
XagI CCTNNNNNAGG 1 cut(s) 545
XhoI CTCGAG 1 cut(s) 143
XmaJI CCTAGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.