Rroxscaffold_6G00417190

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002774
Physical Location & Seq
Reverse (-)
38999248 .. 38999946
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417190.1

Sequence Viewer

Length: 699 bp
ATGACCTCATTCGAGGCATTCTTCGAGGGCTGGCTGGTTCGGCAAGAGCACTACTTGGACGAACTCCAATCGGCCCAGCAGCGAGCCCATGAAGCCCGCGACGTCGATCTGAGAGACTTGGTCTCTCGGGTGCTGCTCCATTACCAGCAATACTATGACGAGAAATCGAGAATTGCGCAGAGAGATGTGTTTCTGGTGTTTTCTCCGACCTGGCTCACTTCGCTGGAGCGGGCCCTGCTCTGGATCGCCGGGTTCAAGCCGGGTCTGGCCTTCCGGCTGCTCTCGGACTCCGTACCCGACTTGTCCGAGGACCAGCGGGTCCGGATGACCCTGCTCATGGAGGAGACCCGGGTCGAGGAGCGGGCCCTGGATGATAAGCTGGCCAAGATTCACGAGAGCGTGGCGGCCCCACCGCTCGTCGACATGGCGCGTCGCTACGCGCGGTGTTTGGACGTTGAGATTGTGGAGGCGGAGGAGGCGGCGACGCGGTCGTTGAAGTCGGCATTGGAGGGCGTGCTGGCGAATGCGAATTTGCTGAGGACCACCATGGCTACGAAGCTGGTGGAGATGCTGAGCGGTGCTCAGGCGGTTCGGTTTTTGGTCACCGTGGCTCAGTTTCAGCTCAAGATTAGGAACTGGGGATTGCAGAGGGACGCCACCGAGAAACAGCGGCGGTCCGGCGGAGGAGGACGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

232

Amino Acids

26.64

Weight (kDa)

6.15

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 2.7e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 4 cut(s) 229, 361, 415, 576
AccI GTMKAC 1 cut(s) 420
AccII CGCG 5 cut(s) 99, 430, 440, 442, 487
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 102, 654
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 240, 337, 355
AgsI TTSAA 2 cut(s) 256, 496
AjnI CCWGG 2 cut(s) 209, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 379, 559, 622
AluI AGCT 3 cut(s) 379, 559, 622
Alw21I GWGCWC 2 cut(s) 51, 583
Alw26I GTCTC 3 cut(s) 108, 127, 338
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 6 cut(s) 72, 231, 267, 363, 381, 405
ApaI GGGCCC 2 cut(s) 235, 367
ApeKI GCWGC 3 cut(s) 79, 133, 277
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 3 cut(s) 178, 430, 442
AsuC2I CCSGG 4 cut(s) 250, 261, 349, 350
AsuHPI GGTGA 1 cut(s) 595
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 4 cut(s) 310, 319, 540, 675
BaeGI GKGCMC 2 cut(s) 235, 367
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 3 cut(s) 88, 235, 367
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 2 cut(s) 51, 583
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 91, 120, 264
BciT130I CCWGG 2 cut(s) 211, 368
BcnI CCSGG 4 cut(s) 250, 261, 349, 350
BcoDI GTCTC 3 cut(s) 108, 127, 338
BisI GCNGC 6 cut(s) 80, 134, 278, 405, 480, 671
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 6 cut(s) 81, 135, 279, 406, 481, 672
Bme1390I CCNGG 6 cut(s) 211, 250, 261, 349, 350, 368
Bme18I GGWCC 4 cut(s) 310, 319, 540, 675
BmeT110I CYCGRG 2 cut(s) 126, 348
BmiI GGNNCC 4 cut(s) 233, 320, 365, 408
BmrFI CCNGG 6 cut(s) 211, 250, 261, 349, 350, 368
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 536, 582
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 4 cut(s) 250, 261, 349, 350
BsaHI GRCGYC 2 cut(s) 102, 654
BsaI GGTCTC 2 cut(s) 127, 338
BsaJI CCNNGG 5 cut(s) 306, 348, 366, 546, 606
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 337, 355
Bse1I ACTGG 1 cut(s) 641
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 2 cut(s) 211, 368
BseDI CCNNGG 5 cut(s) 306, 348, 366, 546, 606
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BseMII CTCAG 5 cut(s) 101, 527, 563, 596, 626
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 4 cut(s) 356, 371, 488, 699
BseSI GKGCMC 2 cut(s) 235, 367
BseXI GCAGC 3 cut(s) 91, 120, 264
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 5 cut(s) 99, 430, 440, 442, 487
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 6 cut(s) 74, 233, 269, 365, 383, 407
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 51, 583
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 6 cut(s) 249, 260, 274, 322, 349, 678
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 3 cut(s) 240, 337, 355
BsmAI GTCTC 3 cut(s) 108, 127, 338
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 2 cut(s) 17, 529
BsnI GGCC 6 cut(s) 74, 233, 269, 365, 383, 407
Bso31I GGTCTC 2 cut(s) 127, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 2 cut(s) 231, 363
Bsp1286I GDGCHC 5 cut(s) 51, 88, 235, 367, 583
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 106, 243
Bsp1720I GCTNAGC 1 cut(s) 572
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 6 cut(s) 74, 233, 269, 365, 383, 407
BspCNI CTCAG 5 cut(s) 102, 528, 564, 595, 625
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 5 cut(s) 99, 430, 440, 442, 487
BspLI GGNNCC 4 cut(s) 233, 320, 365, 408
BspPI GGATC 1 cut(s) 251
BspTNI GGTCTC 2 cut(s) 127, 338
BsrBI CCGCTC 4 cut(s) 229, 361, 415, 576
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 5 cut(s) 306, 348, 366, 546, 606
BssMI GATC 2 cut(s) 106, 243
BssNI GRCGYC 2 cut(s) 102, 654
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 211, 368
Bst4CI ACNGT 2 cut(s) 607, 693
BstACI GRCGYC 2 cut(s) 102, 654
BstC8I GCNNGC 8 cut(s) 32, 84, 97, 231, 363, 381, 515, 519
BstDEI CTNAG 5 cut(s) 110, 536, 572, 582, 612
BstDSI CCRYGG 2 cut(s) 546, 606
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 5 cut(s) 99, 430, 440, 442, 487
BstHHI GCGC 3 cut(s) 178, 430, 442
BstKTI GATC 2 cut(s) 109, 246
BstMAI GTCTC 3 cut(s) 108, 127, 338
BstMBI GATC 2 cut(s) 106, 243
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 5 cut(s) 40, 92, 220, 235, 476
BstNI CCWGG 2 cut(s) 211, 368
BstPAI GACNNNNGTC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 6 cut(s) 209, 248, 259, 347, 348, 366
BstSLI GKGCMC 2 cut(s) 235, 367
BstUI CGCG 5 cut(s) 99, 430, 440, 442, 487
BstV1I GCAGC 3 cut(s) 91, 120, 264
BsuRI GGCC 6 cut(s) 74, 233, 269, 365, 383, 407
BtgI CCRYGG 2 cut(s) 546, 606
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 8 cut(s) 32, 84, 97, 231, 363, 381, 515, 519
CfoI GCGC 3 cut(s) 178, 430, 442
Cfr9I CCCGGG 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 675
CseI GACGC 3 cut(s) 419, 493, 662
Csp6I GTAC 1 cut(s) 293
CspI CGGWCCG 1 cut(s) 675
CviAII CATG 4 cut(s) 89, 337, 424, 547
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 110, 536, 572, 582, 612
DpnI GATC 2 cut(s) 108, 245
DpnII GATC 2 cut(s) 106, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
EciI GGCGGA 2 cut(s) 485, 696
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 3 cut(s) 88, 235, 367
Eco31I GGTCTC 2 cut(s) 127, 338
Eco47I GGWCC 4 cut(s) 310, 319, 540, 675
Eco88I CYCGRG 2 cut(s) 126, 348
Eco91I GGTNACC 1 cut(s) 601
EcoO109I RGGNCCY 2 cut(s) 232, 364
EcoO65I GGTNACC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 209, 366
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 3 cut(s) 88, 235, 367
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 4 cut(s) 92, 340, 427, 550
FaiI YATR 5 cut(s) 90, 156, 338, 425, 548
FaqI GGGAC 1 cut(s) 665
FatI CATG 4 cut(s) 88, 336, 423, 546
FauI CCCGC 4 cut(s) 104, 222, 309, 354
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 6 cut(s) 80, 134, 278, 405, 480, 671
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 3 cut(s) 88, 235, 367
Fsp4HI GCNGC 6 cut(s) 80, 134, 278, 405, 480, 671
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 3 cut(s) 177, 429, 441
GluI GCNGC 6 cut(s) 80, 134, 278, 405, 480, 671
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 6 cut(s) 74, 233, 269, 365, 383, 407
HapII CCGG 6 cut(s) 249, 260, 274, 322, 349, 678
HgaI GACGC 3 cut(s) 419, 493, 662
HhaI GCGC 3 cut(s) 178, 430, 442
Hin1I GRCGYC 2 cut(s) 102, 654
Hin1II CATG 4 cut(s) 92, 340, 427, 550
Hin6I GCGC 3 cut(s) 176, 428, 440
HinP1I GCGC 3 cut(s) 176, 428, 440
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 287, 388
HpaII CCGG 6 cut(s) 249, 260, 274, 322, 349, 678
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 4 cut(s) 111, 207, 286, 307
Hpy188III TCNNGA 5 cut(s) 168, 241, 322, 392, 625
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 5 cut(s) 104, 107, 422, 435, 487
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 607, 693
HpyCH4IV ACGT 2 cut(s) 102, 453
HpyCH4V TGCA 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 92, 220, 235, 476
HpyF3I CTNAG 5 cut(s) 110, 536, 572, 582, 612
HpySE526I ACGT 2 cut(s) 102, 453
Hsp92I GRCGYC 2 cut(s) 102, 654
Hsp92II CATG 4 cut(s) 92, 340, 427, 550
HspAI GCGC 3 cut(s) 176, 428, 440
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 106, 243
LmnI GCTCC 3 cut(s) 141, 226, 358
Lsp1109I GCAGC 3 cut(s) 91, 120, 264
LweI GCATC 1 cut(s) 558
MaeII ACGT 2 cut(s) 102, 453
MaeIII GTNAC 1 cut(s) 601
MalI GATC 2 cut(s) 108, 245
MbiI CCGCTC 4 cut(s) 229, 361, 415, 576
MboI GATC 2 cut(s) 106, 243
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 5 cut(s) 51, 88, 235, 367, 583
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 529
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 316, 670
MspI CCGG 6 cut(s) 249, 260, 274, 322, 349, 678
MspR9I CCNGG 6 cut(s) 211, 250, 261, 349, 350, 368
Mva1269I GAATGC 2 cut(s) 17, 529
MvaI CCWGG 2 cut(s) 211, 368
MvnI CGCG 5 cut(s) 99, 430, 440, 442, 487
MwoI GCNNNNNNNGC 5 cut(s) 40, 92, 220, 235, 476
NciI CCSGG 4 cut(s) 250, 261, 349, 350
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 106, 243
NlaIII CATG 4 cut(s) 92, 340, 427, 550
NlaIV GGNNCC 4 cut(s) 233, 320, 365, 408
NmuCI GTSAC 1 cut(s) 601
NsbI TGCGCA 1 cut(s) 177
PctI GAATGC 2 cut(s) 17, 529
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 119, 487
PkrI GCNGC 6 cut(s) 81, 135, 279, 406, 481, 672
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 209, 366
PspEI GGTNACC 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 209, 366
PspN4I GGNNCC 4 cut(s) 233, 320, 365, 408
PspOMI GGGCCC 2 cut(s) 231, 363
PsyI GACNNNGTC 2 cut(s) 119, 487
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Rsr2I CGGWCCG 1 cut(s) 675
RsrII CGGWCCG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 6 cut(s) 80, 134, 278, 405, 480, 671
Sau3AI GATC 2 cut(s) 106, 243
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 6 cut(s) 211, 250, 261, 349, 350, 368
SduI GDGCHC 5 cut(s) 51, 88, 235, 367, 583
SetI ASST 7 cut(s) 8, 105, 212, 381, 456, 561, 624
SfaNI GCATC 1 cut(s) 558
SinI GGWCC 4 cut(s) 310, 319, 540, 675
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 2 cut(s) 171, 529
StyD4I CCNGG 6 cut(s) 209, 248, 259, 347, 348, 366
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 607, 693
TaiI ACGT 2 cut(s) 105, 456
TaqI TCGA 6 cut(s) 12, 24, 105, 167, 354, 420
TasI AATT 2 cut(s) 171, 529
TauI GCSGC 3 cut(s) 407, 482, 673
TfiI GAWTC 1 cut(s) 388
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 3 cut(s) 79, 133, 277
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 2 cut(s) 119, 487
VpaK11BI GGWCC 4 cut(s) 310, 319, 540, 675
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.