Rh3BG121200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002774
Physical Location & Seq
Forward (+)
9972038 .. 9972736
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG121200.1

Sequence Viewer

Length: 699 bp
ATGACCTCATTCGAGGCATTCTTCGAGGGCTGGCTGGTTCGGCAAGAGCACTACTTGGACGAACTCCAATCGGCCCAGCAGCGAGCCCATGAAGCCCGCGACGTCGATCTGCGAGACCTGGTCTCTCGGGTGCTGATCCATTACCAGCAATACTACGAAGAGAAATCGAGAATTGCGCAGAGAGATGTGTTCCTGGTGTTTTCTCCGACTTGGTTCACTTCGCTGGAGCGGGCCCTGCTCTGGATCGCCGGGTTCAAGCCGGGTCTGGCATTCCGGCTGGTCTCGGACTCCGTACCCGACTTGTCCGCGGACCAGCGGGTCCGGATGACCCGGCTCATCGAGGAGACCCGGGTCGAGGAGCGCGCGCTGGATGATAAGCTGGCCAAGATTCACGAGAGCGTGGCGGCCCCACCGTTCGTCGACGTGGCGCGTCGCCACTCGCGGTGTTTGGACGGTGAGGCTGCGGAGGAGGAGGCGGCGGCGGCGCGGTCGTTGAAGTCGGCATTGGAGGGCGTGCTGGCGAATGCGAATTTGCTGAGGACGACTCTAGCTGCCAAGCTGGTGGAGATGCTGAGCGGCGCTCAGGCGGTTCGGTTTTTGGCCGCGGTGGCTCAGTTTCAGCTCAAGATTAGGAACTGGGGATTGCAGAGGGACGCCGCCGAGAAACAGCGGCGGTCCGGCGGAGGAGGACGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

232

Amino Acids

26.32

Weight (kDa)

7.91

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 1.4e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 2 cut(s) 229, 576
AccI GTMKAC 1 cut(s) 420
AccII CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 2 cut(s) 130, 251
AcoI YGGCCR 2 cut(s) 381, 600
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 102, 654
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 240, 355
AgsI TTSAA 2 cut(s) 256, 496
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 117, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 4 cut(s) 379, 551, 559, 622
AluI AGCT 4 cut(s) 379, 551, 559, 622
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 4 cut(s) 108, 127, 286, 338
AlwI GGATC 2 cut(s) 130, 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 5 cut(s) 72, 231, 381, 405, 600
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 79, 461, 551
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 8 cut(s) 178, 363, 365, 367, 430, 487, 581, 696
AspS9I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 3 cut(s) 310, 319, 675
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 88, 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 91, 448, 538
BciT130I CCWGG 2 cut(s) 119, 194
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 4 cut(s) 108, 127, 286, 338
BfaI CTAG 2 cut(s) 548, 697
BfoI RGCGCY 2 cut(s) 582, 697
BglI GCCNNNNNGGC 1 cut(s) 608
BlpI GCTNAGC 1 cut(s) 572
Bme1390I CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
Bme18I GGWCC 3 cut(s) 310, 319, 675
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 4 cut(s) 529, 561, 565, 597
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 536, 582
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 2 cut(s) 102, 654
BsaI GGTCTC 4 cut(s) 108, 127, 286, 338
BsaJI CCNNGG 3 cut(s) 306, 348, 603
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 355
Bse1I ACTGG 1 cut(s) 641
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 2 cut(s) 119, 194
BseDI CCNNGG 3 cut(s) 306, 348, 603
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 2 cut(s) 240, 355
BseMII CTCAG 4 cut(s) 527, 563, 596, 626
BseNI ACTGG 1 cut(s) 641
BsePI GCGCGC 2 cut(s) 361, 363
BseRI GAGGAG 5 cut(s) 356, 371, 482, 485, 699
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 91, 448, 538
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 5 cut(s) 74, 233, 383, 407, 602
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 240, 355
BsmAI GTCTC 4 cut(s) 108, 127, 286, 338
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 3 cut(s) 17, 269, 529
BsnI GGCC 5 cut(s) 74, 233, 383, 407, 602
Bso31I GGTCTC 4 cut(s) 108, 127, 286, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 51, 88, 235
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 106, 135, 243
Bsp1720I GCTNAGC 1 cut(s) 572
BspANI GGCC 5 cut(s) 74, 233, 383, 407, 602
BspCNI CTCAG 4 cut(s) 528, 564, 595, 625
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 2 cut(s) 130, 251
BspTNI GGTCTC 4 cut(s) 108, 127, 286, 338
BsrBI CCGCTC 2 cut(s) 229, 576
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 3 cut(s) 306, 348, 603
BssHII GCGCGC 2 cut(s) 361, 363
BssMI GATC 3 cut(s) 106, 135, 243
BssNI GRCGYC 2 cut(s) 102, 654
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 119, 194
Bst4CI ACNGT 2 cut(s) 414, 455
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 2 cut(s) 102, 654
BstC8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 515, 519
BstDEI CTNAG 4 cut(s) 536, 572, 582, 612
BstDSI CCRYGG 2 cut(s) 306, 603
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
BstH2I RGCGCY 2 cut(s) 582, 697
BstHHI GCGC 8 cut(s) 178, 363, 365, 367, 430, 487, 581, 696
BstKTI GATC 3 cut(s) 109, 138, 246
BstMAI GTCTC 4 cut(s) 108, 127, 286, 338
BstMBI GATC 3 cut(s) 106, 135, 243
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 5 cut(s) 40, 92, 235, 482, 608
BstNI CCWGG 2 cut(s) 119, 194
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 7 cut(s) 117, 192, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
BstV1I GCAGC 3 cut(s) 91, 448, 538
BstXI CCANNNNNNTGG 1 cut(s) 562
BsuRI GGCC 5 cut(s) 74, 233, 383, 407, 602
BtgI CCRYGG 2 cut(s) 306, 603
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 515, 519
CfoI GCGC 8 cut(s) 178, 363, 365, 367, 430, 487, 581, 696
Cfr13I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
Cfr42I CCGCGG 2 cut(s) 309, 606
Cfr9I CCCGGG 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 675
CseI GACGC 2 cut(s) 419, 662
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 293
CspI CGGWCCG 1 cut(s) 675
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 536, 572, 582, 612
DpnI GATC 3 cut(s) 108, 137, 245
DpnII GATC 3 cut(s) 106, 135, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 381, 600
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 696
Eco24I GRGCYC 2 cut(s) 88, 235
Eco31I GGTCTC 4 cut(s) 108, 127, 286, 338
Eco47I GGWCC 3 cut(s) 310, 319, 675
Eco88I CYCGRG 2 cut(s) 126, 348
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 117, 192
EcoT38I GRGCYC 2 cut(s) 88, 235
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 1 cut(s) 665
FatI CATG 1 cut(s) 88
FauI CCCGC 3 cut(s) 104, 222, 309
FblI GTMKAC 1 cut(s) 420
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 2 cut(s) 88, 235
FspBI CTAG 2 cut(s) 548, 697
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 8 cut(s) 177, 362, 364, 366, 429, 486, 580, 695
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 2 cut(s) 582, 697
HaeIII GGCC 5 cut(s) 74, 233, 383, 407, 602
HapII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
HgaI GACGC 2 cut(s) 419, 662
HhaI GCGC 8 cut(s) 178, 363, 365, 367, 430, 487, 581, 696
Hin1I GRCGYC 2 cut(s) 102, 654
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 8 cut(s) 176, 361, 363, 365, 428, 485, 579, 694
HinP1I GCGC 8 cut(s) 176, 361, 363, 365, 428, 485, 579, 694
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 287, 388, 544
HpaII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 2 cut(s) 207, 286
Hpy188III TCNNGA 5 cut(s) 168, 241, 322, 392, 625
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 5 cut(s) 104, 107, 422, 425, 435
HpyCH4III ACNGT 2 cut(s) 414, 455
HpyCH4IV ACGT 2 cut(s) 102, 423
HpyCH4V TGCA 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 92, 235, 482, 608
HpyF3I CTNAG 4 cut(s) 536, 572, 582, 612
HpySE526I ACGT 2 cut(s) 102, 423
Hsp92I GRCGYC 2 cut(s) 102, 654
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 8 cut(s) 176, 361, 363, 365, 428, 485, 579, 694
Kpn2I TCCGGA 1 cut(s) 321
KspI CCGCGG 2 cut(s) 309, 606
Kzo9I GATC 3 cut(s) 106, 135, 243
LmnI GCTCC 2 cut(s) 226, 358
Lsp1109I GCAGC 3 cut(s) 91, 448, 538
LweI GCATC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 2 cut(s) 548, 697
MaeII ACGT 2 cut(s) 102, 423
MalI GATC 3 cut(s) 108, 137, 245
MbiI CCGCTC 2 cut(s) 229, 576
MboI GATC 3 cut(s) 106, 135, 243
MboII GAAGA 2 cut(s) 13, 170
MhlI GDGCHC 3 cut(s) 51, 88, 235
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 529
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 281, 538
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 4 cut(s) 308, 316, 605, 670
MspI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 678
MspR9I CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 529
MvaI CCWGG 2 cut(s) 119, 194
MvnI CGCG 8 cut(s) 99, 308, 363, 365, 430, 442, 487, 605
MwoI GCNNNNNNNGC 5 cut(s) 40, 92, 235, 482, 608
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 3 cut(s) 106, 135, 243
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NmeAIII GCCGAG 1 cut(s) 685
NsbI TGCGCA 1 cut(s) 177
PauI GCGCGC 2 cut(s) 361, 363
PctI GAATGC 3 cut(s) 17, 269, 529
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 1 cut(s) 119
PleI GAGTC 2 cut(s) 281, 538
PpsI GAGTC 2 cut(s) 281, 538
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 117, 192
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 117, 192
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
PsyI GACNNNGTC 1 cut(s) 119
PteI GCGCGC 2 cut(s) 361, 363
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Rsr2I CGGWCCG 1 cut(s) 675
RsrII CGGWCCG 1 cut(s) 675
SacII CCGCGG 2 cut(s) 309, 606
SalI GTCGAC 1 cut(s) 419
Sau3AI GATC 3 cut(s) 106, 135, 243
Sau96I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 675
SchI GAGTC 2 cut(s) 281, 538
ScrFI CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
SduI GDGCHC 3 cut(s) 51, 88, 235
SetI ASST 8 cut(s) 8, 105, 120, 381, 426, 553, 561, 624
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 558
Sfr303I CCGCGG 2 cut(s) 309, 606
SgrBI CCGCGG 2 cut(s) 309, 606
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 3 cut(s) 310, 319, 675
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 2 cut(s) 171, 529
SspMI CTAG 2 cut(s) 548, 697
StyD4I CCNGG 7 cut(s) 117, 192, 248, 259, 329, 347, 348
TaaI ACNGT 2 cut(s) 414, 455
TaiI ACGT 2 cut(s) 105, 426
TaqI TCGA 7 cut(s) 12, 24, 105, 167, 339, 354, 420
TasI AATT 2 cut(s) 171, 529
TauI GCSGC 8 cut(s) 407, 479, 482, 485, 579, 605, 659, 673
TfiI GAWTC 1 cut(s) 388
TseI GCWGC 3 cut(s) 79, 461, 551
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 310, 319, 675
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 2 cut(s) 548, 697
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.