Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Forward (+)

59130466 .. 59130636

Gene Structure 171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG419500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAACCGGACCAGGGGAGGGAGCTGGAGGAGCGAGAGGGAGCTGGAGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGGAGACGGCGAGCAGAGTGGGGAGGTTGATGGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

56

Amino Acids

5.86

Weight (kDa)

4.1

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	2 cut(s)	117, 123
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	50, 55
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	61, 80
AluI	AGCT	2 cut(s)	61, 80
Alw26I	GTCTC	2 cut(s)	14, 129
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	119
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	14, 129
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	118, 123
BlsI	GCNGC	2 cut(s)	119, 124
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	50
BpmI	CTGGAG	3 cut(s)	83, 102, 153
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 55
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	50, 55
BseRI	GAGGAG	2 cut(s)	80, 99
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	50, 55
BsmAI	GTCTC	2 cut(s)	14, 129
BsmBI	CGTCTC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	117, 123
BspLI	GGNNCC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	2 cut(s)	14, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	2 cut(s)	61, 80
CviKI_1	RGCY	2 cut(s)	61, 80
DinI	GGCGCC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	48
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	118, 123
Fsp4HI	GCNGC	2 cut(s)	118, 123
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	118, 123
GsuI	CTGGAG	3 cut(s)	83, 102, 153
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	4, 101, 128
HpaII	CCGG	1 cut(s)	44
Hpy188III	TCNNGA	4 cut(s)	19, 32, 105, 132
HpyCH4III	ACNGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	58, 67, 77
LpnPI	CCDG	8 cut(s)	17, 35, 47, 57, 62, 66, 90, 117
Mly113I	GGCGCC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	34, 48, 58, 67, 77, 91, 148
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	67
NarI	GGCGCC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	4, 101, 128
PkrI	GCNGC	2 cut(s)	119, 124
PluTI	GGCGCC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	46
SatI	GCNGC	2 cut(s)	118, 123
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	4 cut(s)	26, 63, 82, 159
SfoI	GGCGCC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	46
SsiI	CCGC	2 cut(s)	117, 123
SspDI	GGCGCC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	18
TauI	GCSGC	2 cut(s)	120, 125
TfiI	GAWTC	3 cut(s)	4, 101, 128
TspGWI	ACGGA	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.