MD03G1039500.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002774
Physical Location & Seq
Reverse (-)
3137161 .. 3137694
534 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1039500.v1.1.491

Sequence Viewer

Length: 534 bp
ATGTCTCACTACCAGCAGTACTTCGCCGAGAAAGCCAGAACGGCGGAGGAGGATGTGTTTGTCTTGTTTTCGCCGCCCTGGCTCAGCTCATTCGAGAGGAGCTTGCTCTGGTTGGGGGGATTCAAGCCGTCAATGGTGCTGCGGATGGTGGACAGCTCGATTGAGGACTTGACGGCGGAGCAGGCGACGGAGATGGACGCGGTGAAGGGCGAGACGAGGCGGGCGGAGCGGGAGCTCTTGGAGACAATGGCAAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGCCGCTGGCGAGGAGGGTGGGGAGGCTGATGGACGAGGAGACGCTGAAGACGGCGATGATGGGGGTTATTAAGAGCGCCGATGGGCTTCGCGGGTCGACGGTGAGGAAGGTAGTGAAGTTGTTGAGTCCGGAGCAGGTTGAAGAACGACTTACATATGTTACCGTTTTATTTTTGTTTTTGGGCCTTCATTTGAATGTTTTAGGCTCAACTGGGCCTTTTTCTCTTTTTGGTTTTCTGTTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

178

Amino Acids

19.92

Weight (kDa)

5.52

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 1 - 51 1.4e-20 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 383
AccII CGCG 2 cut(s) 200, 378
AccIII TCCGGA 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 124, 428, 481
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 4 cut(s) 87, 102, 156, 235
AluI AGCT 4 cut(s) 87, 102, 156, 235
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 9, 206, 236, 320
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 2 cut(s) 469, 500
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 2 cut(s) 277, 365
AspS9I GGNCC 2 cut(s) 469, 500
AsuHPI GGTGA 2 cut(s) 214, 400
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 126
BccI CCATC 5 cut(s) 139, 187, 310, 340, 362
BceAI ACGGC 4 cut(s) 57, 112, 189, 354
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 4 cut(s) 9, 206, 236, 320
BfoI RGCGCY 2 cut(s) 278, 366
BfuAI ACCTGC 1 cut(s) 412
BglI GCCNNNNNGGC 2 cut(s) 41, 79
BisI GCNGC 5 cut(s) 74, 140, 273, 278, 290
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 5 cut(s) 75, 141, 274, 279, 291
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 469, 500
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 341
Bpu1102I GCTNAGC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse1I ACTGG 1 cut(s) 502
BseAI TCCGGA 1 cut(s) 415
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 2 cut(s) 58, 150
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 4 cut(s) 62, 112, 313, 338
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 2 cut(s) 200, 378
BshFI GGCC 2 cut(s) 471, 502
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 416
BsmAI GTCTC 4 cut(s) 9, 206, 236, 320
BsmBI CGTCTC 2 cut(s) 206, 320
BsnI GGCC 2 cut(s) 471, 502
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 415
Bsp1720I GCTNAGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 471, 502
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 2 cut(s) 200, 378
BspLI GGNNCC 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 77
BssNI GRCGYC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 388, 451
BstACI GRCGYC 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 104, 183, 222, 294
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 58, 150
BstFNI CGCG 2 cut(s) 200, 378
BstH2I RGCGCY 2 cut(s) 278, 366
BstHHI GCGC 2 cut(s) 277, 365
BstMAI GTCTC 4 cut(s) 9, 206, 236, 320
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 79, 182, 226, 286
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 2 cut(s) 200, 378
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 471, 502
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 58, 150
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 4 cut(s) 104, 183, 222, 294
CfoI GCGC 2 cut(s) 277, 365
Cfr13I GGNCC 2 cut(s) 469, 500
CseI GACGC 2 cut(s) 206, 337
Csp6I GTAC 1 cut(s) 19
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 83
DinI GGCGCC 1 cut(s) 276
EciI GGCGGA 3 cut(s) 59, 191, 239
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 276
EheI GGCGCC 1 cut(s) 276
Esp3I CGTCTC 2 cut(s) 206, 320
FaiI YATR 2 cut(s) 442, 444
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FauI CCCGC 3 cut(s) 213, 222, 371
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 74, 140, 273, 278, 290
FokI GGATG 2 cut(s) 65, 157
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 5 cut(s) 74, 140, 273, 278, 290
GlaI GCGC 2 cut(s) 276, 364
GluI GCNGC 5 cut(s) 74, 140, 273, 278, 290
HaeII RGCGCY 2 cut(s) 278, 366
HaeIII GGCC 2 cut(s) 471, 502
HapII CCGG 1 cut(s) 416
HgaI GACGC 2 cut(s) 206, 337
HhaI GCGC 2 cut(s) 277, 365
Hin1I GRCGYC 1 cut(s) 275
Hin6I GCGC 2 cut(s) 275, 363
HinP1I GCGC 2 cut(s) 275, 363
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 4 cut(s) 120, 256, 283, 412
HpaII CCGG 1 cut(s) 416
HphI GGTGA 2 cut(s) 214, 400
Hpy166II GTNNAC 3 cut(s) 151, 384, 528
Hpy188III TCNNGA 3 cut(s) 94, 260, 416
Hpy8I GTNNAC 3 cut(s) 151, 384, 528
Hpy99I CGWCG 2 cut(s) 190, 388
HpyAV CCTTC 3 cut(s) 199, 388, 482
HpyCH4III ACNGT 2 cut(s) 388, 451
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 79, 182, 226, 286
HpyF3I CTNAG 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 275
HspAI GCGC 2 cut(s) 275, 363
KasI GGCGCC 1 cut(s) 274
Kpn2I TCCGGA 1 cut(s) 415
LmnI GCTCC 5 cut(s) 99, 178, 226, 232, 418
Lsp1109I GCAGC 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 445
MbiI CCGCTC 1 cut(s) 229
MboII GAAGA 2 cut(s) 346, 440
MhlI GDGCHC 1 cut(s) 237
Mly113I GGCGCC 1 cut(s) 275
MlyI GAGTC 1 cut(s) 421
MroI TCCGGA 1 cut(s) 415
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 200, 378
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 79, 182, 226, 286
NarI GGCGCC 1 cut(s) 275
NdeI CATATG 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 52
PfeI GAWTC 3 cut(s) 120, 256, 283
PkrI GCNGC 5 cut(s) 75, 141, 274, 279, 291
PleI GAGTC 1 cut(s) 420
PluTI GGCGCC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 469, 500
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 74, 140, 273, 278, 290
Sau96I GGNCC 2 cut(s) 469, 500
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 237
SetI ASST 6 cut(s) 89, 104, 158, 237, 399, 426
SfoI GGCGCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 480
SspDI GGCGCC 1 cut(s) 274
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 388, 451
TaqI TCGA 3 cut(s) 93, 158, 383
TatI WGTACW 1 cut(s) 18
TauI GCSGC 4 cut(s) 76, 275, 280, 292
TfiI GAWTC 3 cut(s) 120, 256, 283
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.