Rroxscaffold_3G00228180

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002774
Physical Location & Seq
Reverse (-)
12558774 .. 12559451
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228180.1

Sequence Viewer

Length: 678 bp
ATGTCTCACCCAATCCGAGAGCGCTTCGTCGTTTTTCTCCAAGACTGGCTACTCCGGCAGCAAGACTTGCTCGACCAACTCCTCCTCTGCTCTGCTTCAGTCAAAGACGACGACGACGACCGTCAGAGGCATTTGATCGAACAGTTTCTGTGCCACTACCAGCAGTACTTCCACGAGAAATCCCGCGCCGCCGAGGAGGACGTTTTCGTCATTTTCTCTCCTCCCTGGCTCTCCTCCCTCGAGCGCGCCTTGCTCTGGCTCGCCGGCTTCAAGCCCTCGATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAACCGGACCAGGCCAGGGAGCTGGAGAATCTCAAGCTGGAGACGACGAGGAGCGAGAGGGATCTGTCGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGGAGACGGCGAGGAGAGTGGGGAGGTTGATGGACGGTGAGATTTCGACGTTGGATGAGGCGATGGAGGAGCTTAAAGCTGCGATGCTGAGGTTGACTGAGAGCTCCGACGGACTTCGTGGGTCGACGGCGAGGAAGGTGGTGGAGGTTTTGAGTCCGAGACAGACTGTGAAGGTTTTGGCGGCAGTGGCGCAGTTTCAGCTCAGAATTCGAAGTTGGGGGTTGCAAAGAGACCAGCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

225

Amino Acids

26.05

Weight (kDa)

5.53

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 35 - 100 5.1e-25 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 557
AccII CGCG 2 cut(s) 186, 246
AciI CCGC 5 cut(s) 184, 189, 419, 425, 614
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 167
AfeI AGCGCT 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 255, 334
AgsI TTSAA 2 cut(s) 271, 319
AjnI CCWGG 3 cut(s) 224, 327, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AluBI AGCT 7 cut(s) 340, 355, 505, 512, 537, 634, 675
AluI AGCT 7 cut(s) 340, 355, 505, 512, 537, 634, 675
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 6 cut(s) 9, 293, 353, 431, 586, 657
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 23
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 58, 512
ApoI RAATTY 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 6 cut(s) 24, 188, 246, 248, 424, 625
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 643
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 539
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 2 cut(s) 70, 499
BccI CCATC 2 cut(s) 457, 490
BceAI ACGGC 2 cut(s) 456, 576
BciT130I CCWGG 3 cut(s) 226, 329, 334
BcoDI GTCTC 6 cut(s) 9, 293, 353, 431, 586, 657
BfoI RGCGCY 2 cut(s) 25, 425
BisI GCNGC 6 cut(s) 59, 189, 420, 425, 513, 615
BlsI GCNGC 6 cut(s) 60, 190, 421, 426, 514, 616
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 226, 329, 334
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 226, 329, 334
BmsI GCATC 1 cut(s) 507
BoxI GACNNNNGTC 1 cut(s) 120
BpmI CTGGAG 3 cut(s) 362, 377, 455
Bpu10I CCTNAGC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 422
BsaI GGTCTC 2 cut(s) 293, 657
BsaJI CCNNGG 3 cut(s) 192, 224, 333
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 334
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 3 cut(s) 226, 329, 334
BseDI CCNNGG 3 cut(s) 192, 224, 333
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 255, 334
BseMII CTCAG 3 cut(s) 512, 522, 649
BseNI ACTGG 1 cut(s) 50
BsePI GCGCGC 1 cut(s) 244
BseRI GAGGAG 8 cut(s) 71, 74, 209, 210, 223, 382, 460, 515
BseXI GCAGC 2 cut(s) 70, 499
Bsh1236I CGCG 2 cut(s) 186, 246
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 55, 264, 323
BslI CCNNNNNNNGG 2 cut(s) 255, 334
BsmAI GTCTC 6 cut(s) 9, 293, 353, 431, 586, 657
BsmBI CGTCTC 2 cut(s) 353, 431
BsnI GGCC 1 cut(s) 332
Bso31I GGTCTC 2 cut(s) 293, 657
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 2 cut(s) 135, 379
BspACI CCGC 5 cut(s) 184, 189, 419, 425, 614
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 3 cut(s) 513, 523, 648
BspFNI CGCG 2 cut(s) 186, 246
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 2 cut(s) 293, 657
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 192, 224, 333
BssHII GCGCGC 1 cut(s) 244
BssMI GATC 2 cut(s) 135, 379
BssNI GRCGYC 1 cut(s) 422
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 3 cut(s) 226, 329, 334
Bst4CI ACNGT 4 cut(s) 122, 144, 470, 601
BstACI GRCGYC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 3 cut(s) 246, 261, 265
BstDEI CTNAG 3 cut(s) 521, 531, 635
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 186, 246
BstH2I RGCGCY 2 cut(s) 25, 425
BstHHI GCGC 6 cut(s) 24, 188, 246, 248, 424, 625
BstKTI GATC 2 cut(s) 138, 382
BstMAI GTCTC 6 cut(s) 9, 293, 353, 431, 586, 657
BstMBI GATC 2 cut(s) 135, 379
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 5 cut(s) 55, 67, 250, 620, 631
BstNI CCWGG 3 cut(s) 226, 329, 334
BstPAI GACNNNNGTC 1 cut(s) 120
BstSCI CCNGG 3 cut(s) 224, 327, 332
BstUI CGCG 2 cut(s) 186, 246
BstV1I GCAGC 2 cut(s) 70, 499
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 332
BtgZI GCGATG 2 cut(s) 509, 530
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 3 cut(s) 246, 261, 265
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 6 cut(s) 24, 188, 246, 248, 424, 625
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 292
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 521, 531, 635
DinI GGCGCC 1 cut(s) 423
DpnI GATC 2 cut(s) 137, 381
DpnII GATC 2 cut(s) 135, 379
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 2 cut(s) 293, 657
Eco47I GGWCC 1 cut(s) 325
Eco47III AGCGCT 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 639
EcoRII CCWGG 3 cut(s) 224, 327, 332
EcoT38I GRGCYC 1 cut(s) 539
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
Esp3I CGTCTC 2 cut(s) 353, 431
FaeI CATG 1 cut(s) 295
FaiI YATR 1 cut(s) 293
FatI CATG 1 cut(s) 291
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 6 cut(s) 59, 189, 420, 425, 513, 615
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 6 cut(s) 59, 189, 420, 425, 513, 615
GlaI GCGC 6 cut(s) 23, 187, 245, 247, 423, 624
GluI GCNGC 6 cut(s) 59, 189, 420, 425, 513, 615
GsuI CTGGAG 3 cut(s) 362, 377, 455
HaeII RGCGCY 2 cut(s) 25, 425
HaeIII GGCC 1 cut(s) 332
HapII CCGG 3 cut(s) 55, 264, 323
HhaI GCGC 6 cut(s) 24, 188, 246, 248, 424, 625
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 6 cut(s) 22, 186, 244, 246, 422, 623
HinP1I GCGC 6 cut(s) 22, 186, 244, 246, 422, 623
HincII GTYRAC 2 cut(s) 528, 558
HindII GTYRAC 2 cut(s) 528, 558
HinfI GANTC 5 cut(s) 283, 346, 403, 430, 586
HpaII CCGG 3 cut(s) 55, 264, 323
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 528, 558
Hpy188I TCNGA 6 cut(s) 17, 126, 388, 541, 591, 638
Hpy188III TCNNGA 4 cut(s) 298, 311, 407, 434
Hpy8I GTNNAC 2 cut(s) 528, 558
Hpy99I CGWCG 8 cut(s) 32, 113, 116, 119, 367, 484, 545, 562
HpyAV CCTTC 2 cut(s) 562, 598
HpyCH4III ACNGT 4 cut(s) 122, 144, 470, 601
HpyCH4IV ACGT 2 cut(s) 201, 482
HpyCH4V TGCA 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 67, 250, 620, 631
HpyF3I CTNAG 3 cut(s) 521, 531, 635
HpySE526I ACGT 2 cut(s) 201, 482
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 6 cut(s) 22, 186, 244, 246, 422, 623
KasI GGCGCC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 135, 379
LmnI GCTCC 4 cut(s) 337, 369, 502, 542
Lsp1109I GCAGC 2 cut(s) 70, 499
LweI GCATC 1 cut(s) 507
MaeII ACGT 2 cut(s) 201, 482
MalI GATC 2 cut(s) 137, 381
MboI GATC 2 cut(s) 135, 379
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 1 cut(s) 639
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 3 cut(s) 366, 465, 564
MroNI GCCGGC 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 507
MspI CCGG 3 cut(s) 55, 264, 323
MspR9I CCNGG 3 cut(s) 226, 329, 334
MvaI CCWGG 3 cut(s) 226, 329, 334
MvnI CGCG 2 cut(s) 186, 246
MwoI GCNNNNNNNGC 5 cut(s) 55, 67, 250, 620, 631
NaeI GCCGGC 1 cut(s) 265
NarI GGCGCC 1 cut(s) 422
NdeII GATC 2 cut(s) 135, 379
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 1 cut(s) 217
NspV TTCGAA 1 cut(s) 643
PaeR7I CTCGAG 1 cut(s) 239
PauI GCGCGC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 303
PdiI GCCGGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 4 cut(s) 283, 346, 403, 430
PkrI GCNGC 6 cut(s) 60, 190, 421, 426, 514, 616
PleI GAGTC 1 cut(s) 594
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 594
PshAI GACNNNNGTC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 3 cut(s) 224, 327, 332
PspGI CCWGG 3 cut(s) 224, 327, 332
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 325
PspXI VCTCGAGB 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 379
PteI GCGCGC 1 cut(s) 244
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacI GAGCTC 1 cut(s) 539
SalI GTCGAC 1 cut(s) 556
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 6 cut(s) 59, 189, 420, 425, 513, 615
Sau3AI GATC 2 cut(s) 135, 379
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 3 cut(s) 226, 329, 334
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 1 cut(s) 507
SfoI GGCGCC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 643
SinI GGWCC 1 cut(s) 325
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 239, 350
SmoI CTYRAG 2 cut(s) 239, 350
Sse9I AATT 1 cut(s) 639
SsiI CCGC 5 cut(s) 184, 189, 419, 425, 614
SspDI GGCGCC 1 cut(s) 421
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 3 cut(s) 224, 327, 332
TaaI ACNGT 4 cut(s) 122, 144, 470, 601
TaiI ACGT 2 cut(s) 204, 485
TaqI TCGA 8 cut(s) 72, 138, 240, 278, 297, 479, 557, 643
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 165
TauI GCSGC 4 cut(s) 191, 422, 427, 617
TfiI GAWTC 4 cut(s) 283, 346, 403, 430
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 624
TseI GCWGC 2 cut(s) 58, 512
TspGWI ACGGA 2 cut(s) 295, 558
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 639
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.