pycom12g10500

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002774
Physical Location & Seq
Forward (+)
12545020 .. 12545391
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g10500.1

Sequence Viewer

Length: 372 bp
ATGAAAACCCCAGAAACCTTTGCTGTTTTTGTTTTGGTTATGACAAACGGCTCTCACAGCGGCAATGCGTCGAACACATTCGAGGCATTCTACGAGGGCTGGCTGGTCCGGCAAGAACACTTCCTCGATGAGCTCTTATCGGCCCAGCAGACGATCGACGAGGCCCGAGATGAAGACCTCCGACATTTGGTGTCTCGGGTTCTCTTCCATTACCAGCAGTATTACGACGAGAAATCACGACTTGGACAGCGGGATGTTTTACTGGTTTCCTCACCGACATGGTATACTTCCTACGAAAGCAGCCTGCTTTGGATCGCCGGGTACAAACCGGGTATCGTATTCCGGCTCGCGATCGAGTCGGTGCCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

124

Amino Acids

14.25

Weight (kDa)

4.97

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 42 - 117 2.5e-20 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 284
AccII CGCG 1 cut(s) 350
AciI CCGC 2 cut(s) 60, 250
AclWI GGATC 1 cut(s) 320
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 165, 195
AoxI GGCC 2 cut(s) 141, 162
ApeKI GCWGC 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 106, 142, 163
AsuC2I CCSGG 2 cut(s) 319, 330
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 2 cut(s) 165, 195
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 64
BcnI CCSGG 2 cut(s) 319, 330
BcoDI GTCTC 1 cut(s) 198
BisI GCNGC 2 cut(s) 61, 301
BlsI GCNGC 2 cut(s) 62, 302
Bme1390I CCNGG 2 cut(s) 319, 330
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 2 cut(s) 165, 195
BmgT120I GGNCC 3 cut(s) 106, 142, 163
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 2 cut(s) 319, 330
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 319, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 70
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 2 cut(s) 156, 354
BshFI GGCC 2 cut(s) 143, 164
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 2 cut(s) 156, 354
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 2 cut(s) 165, 195
BsiSI CCGG 4 cut(s) 109, 318, 329, 343
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 143, 164
BsoBI CYCGRG 2 cut(s) 165, 195
Bsp1286I GDGCHC 2 cut(s) 135, 366
Bsp143I GATC 3 cut(s) 153, 312, 351
Bsp68I TCGCGA 1 cut(s) 350
BspACI CCGC 2 cut(s) 60, 250
BspANI GGCC 2 cut(s) 143, 164
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 267
BssMI GATC 3 cut(s) 153, 312, 351
BssNAI GTATAC 1 cut(s) 285
Bst1107I GTATAC 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 101, 305, 348
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 3 cut(s) 156, 315, 354
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 153, 312, 351
BstMCI CGRYCG 2 cut(s) 156, 354
BstMWI GCNNNNNNNGC 2 cut(s) 57, 109
BstSCI CCNGG 2 cut(s) 317, 328
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 180
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 143, 164
BtsCI GGATG 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 101, 305, 348
Cfr13I GGNCC 3 cut(s) 106, 142, 163
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 279
CviJI RGCY 8 cut(s) 51, 99, 103, 133, 143, 164, 303, 346
CviKI_1 RGCY 8 cut(s) 51, 99, 103, 133, 143, 164, 303, 346
CviQI GTAC 1 cut(s) 322
DpnI GATC 3 cut(s) 155, 314, 353
DpnII GATC 3 cut(s) 153, 312, 351
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 165, 195
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 282
FaiI YATR 3 cut(s) 41, 280, 285
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 61, 301
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 61, 301
GluI GCNGC 2 cut(s) 61, 301
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 143, 164
HapII CCGG 4 cut(s) 109, 318, 329, 343
HgaI GACGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 282
HinfI GANTC 1 cut(s) 356
HpaII CCGG 4 cut(s) 109, 318, 329, 343
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 237, 349
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 3 cut(s) 73, 161, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 109
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 3 cut(s) 153, 312, 351
Lsp1109I GCAGC 1 cut(s) 312
MalI GATC 3 cut(s) 155, 314, 353
MboI GATC 3 cut(s) 153, 312, 351
MboII GAAGA 2 cut(s) 185, 196
MhlI GDGCHC 2 cut(s) 135, 366
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 76, 88, 134, 154, 188, 280
MroXI GAANNNNTTC 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 2 cut(s) 60, 250
MspI CCGG 4 cut(s) 109, 318, 329, 343
MspR9I CCNGG 2 cut(s) 319, 330
Mva1269I GAATGC 1 cut(s) 86
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 57, 109
NciI CCSGG 2 cut(s) 319, 330
NdeII GATC 3 cut(s) 153, 312, 351
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 363
NruI TCGCGA 1 cut(s) 350
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 62, 302
Ple19I CGATCG 2 cut(s) 156, 354
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 3 cut(s) 106, 142, 163
PvuI CGATCG 2 cut(s) 156, 354
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 277
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 2 cut(s) 61, 301
Sau3AI GATC 3 cut(s) 153, 312, 351
Sau96I GGNCC 3 cut(s) 106, 142, 163
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 319, 330
SduI GDGCHC 2 cut(s) 135, 366
SetI ASST 3 cut(s) 20, 135, 180
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 277
SsiI CCGC 2 cut(s) 60, 250
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 317, 328
TaqI TCGA 5 cut(s) 71, 81, 126, 156, 354
TauI GCSGC 1 cut(s) 63
TseI GCWGC 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 17, 186
VpaK11BI GGWCC 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.