Rh7AG429700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002774
Physical Location & Seq
Forward (+)
57701757 .. 57702473
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG429700.1

Sequence Viewer

Length: 552 bp
ATGAGGAAAGTGACTTACCAAAATGTCTCACCCAATCCGAGAGCAAGACTTGCTCGACCAACTCCTGCTCTGCTCTGCTTCAGTCAAAGACGACGACGACGACCGTCAGAGGCATTTGATCGAACAGGTTCTGTGCCACTACCAGCAGTACTTCCACGAGAAATCCCGCACCACCGAGGAGGACGTTTTCGTCATTTTCTCTCCTCCCTCGAGCGCGCCTTGCTCTGGCTCGCCGGCTTCAAGCCCTCGATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAGCCGGACCAGGCGAGGGAGCTGGAGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGTGCCGCCGATTCTGGAGACGGCGAGGAGAGTGGGGAGGTTGATGGACGGTGAGATTTCGACGTTGGATGAGGCGATGGAGGCGCTGAAGGCGAAGATGCTGAGGTTGACCGAGAGCGCCGACGGACTTCGTGGGTCGACGGCGAGGAAGGTGGTGGAGGTTTTGAGTCCGAGTCAGCCTGTGAAGGTTTTGGTGGTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

183

Amino Acids

20.62

Weight (kDa)

10.94

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 68 - 90 4.4e-06 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 485
AccII CGCG 1 cut(s) 216
AciI CCGC 3 cut(s) 167, 347, 353
AcuI CTGAAG 2 cut(s) 64, 455
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 225, 304
AgsI TTSAA 2 cut(s) 241, 289
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 31, 263, 359
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 4 cut(s) 216, 218, 433, 467
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 21, 410
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 349
BauI CACGAG 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 449
BccI CCATC 2 cut(s) 385, 418
BceAI ACGGC 2 cut(s) 384, 504
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 31, 263, 359
BfoI RGCGCY 2 cut(s) 434, 468
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 435
BoxI GACNNNNGTC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 332, 383
Bpu10I CCTNAGC 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 304
Bse118I RCCGGY 1 cut(s) 233
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 2 cut(s) 225, 304
BseMII CTCAG 1 cut(s) 440
BsePI GCGCGC 1 cut(s) 214
BseRI GAGGAG 4 cut(s) 192, 193, 329, 388
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 234, 293
BslI CCNNNNNNNGG 2 cut(s) 225, 304
BsmAI GTCTC 3 cut(s) 31, 263, 359
BsmBI CGTCTC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 3 cut(s) 167, 347, 353
BspCNI CTCAG 1 cut(s) 441
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 175
BssHII GCGCGC 1 cut(s) 214
BssMI GATC 1 cut(s) 118
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 105, 398
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 216, 231, 235
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 2 cut(s) 434, 468
BstHHI GCGC 4 cut(s) 216, 218, 433, 467
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 3 cut(s) 31, 263, 359
BstMBI GATC 1 cut(s) 118
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 4 cut(s) 50, 220, 428, 437
BstNI CCWGG 1 cut(s) 299
BstPAI GACNNNNGTC 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 297
BstUI CGCG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 421
Cac8I GCNNGC 3 cut(s) 216, 231, 235
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 4 cut(s) 216, 218, 433, 467
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 262
CviJI RGCY 6 cut(s) 229, 237, 244, 292, 310, 526
CviKI_1 RGCY 6 cut(s) 229, 237, 244, 292, 310, 526
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 449
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 64, 455
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 1 cut(s) 265
FaiI YATR 1 cut(s) 263
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 174
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 353
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 353
GlaI GCGC 4 cut(s) 215, 217, 432, 466
GluI GCNGC 1 cut(s) 353
GsuI CTGGAG 2 cut(s) 332, 383
HaeII RGCGCY 2 cut(s) 434, 468
HapII CCGG 2 cut(s) 234, 293
HhaI GCGC 4 cut(s) 216, 218, 433, 467
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 4 cut(s) 214, 216, 431, 465
HinP1I GCGC 4 cut(s) 214, 216, 431, 465
HincII GTYRAC 2 cut(s) 456, 486
HindII GTYRAC 2 cut(s) 456, 486
HinfI GANTC 5 cut(s) 253, 331, 358, 514, 520
HpaII CCGG 2 cut(s) 234, 293
HphI GGTGA 2 cut(s) 21, 410
Hpy166II GTNNAC 2 cut(s) 456, 486
Hpy188I TCNGA 3 cut(s) 39, 109, 519
Hpy188III TCNNGA 4 cut(s) 268, 281, 335, 362
Hpy8I GTNNAC 2 cut(s) 456, 486
Hpy99I CGWCG 6 cut(s) 96, 99, 102, 412, 473, 490
HpyAV CCTTC 3 cut(s) 430, 490, 526
HpyCH4III ACNGT 2 cut(s) 105, 398
HpyCH4IV ACGT 2 cut(s) 184, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 220, 428, 437
HpyF3I CTNAG 1 cut(s) 449
HpySE526I ACGT 2 cut(s) 184, 410
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 4 cut(s) 214, 216, 431, 465
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 307
LweI GCATC 1 cut(s) 435
MaeII ACGT 2 cut(s) 184, 410
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 454
MlyI GAGTC 2 cut(s) 523, 529
MmeI TCCRAC 1 cut(s) 393
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 127
MspI CCGG 2 cut(s) 234, 293
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 50, 220, 428, 437
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 1 cut(s) 118
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 209
PauI GCGCGC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 273
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 253, 331, 358
PkrI GCNGC 1 cut(s) 354
PleI GAGTC 2 cut(s) 522, 528
PpsI GAGTC 2 cut(s) 522, 528
PshAI GACNNNNGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 295
PspXI VCTCGAGB 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 131
PteI GCGCGC 1 cut(s) 214
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SalI GTCGAC 1 cut(s) 484
SatI GCNGC 1 cut(s) 353
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 295
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 2 cut(s) 523, 529
ScrFI CCNGG 1 cut(s) 299
SfaNI GCATC 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 3 cut(s) 167, 347, 353
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 105, 398
TaiI ACGT 2 cut(s) 187, 413
TaqI TCGA 7 cut(s) 55, 121, 210, 248, 267, 407, 485
TaqII GACCGA 1 cut(s) 473
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 3 cut(s) 253, 331, 358
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 2 cut(s) 265, 486
VpaK11BI GGWCC 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.