AT1G58330

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002774
Physical Location & Seq
Forward (+)
21641091 .. 21642041
951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58330.1

Sequence Viewer

Length: 678 bp
ATGCCAATCACTAGCAGCTCTGAAACTTTTGCGAGCTTCTTCAATGACTGGCTCTGCCGTCACAGGCAATTCGTCCAACAACTTGCACACCTTGCTGATGAAACAACCATTGTAACTCCAATAGAAGAAGAATCTCTTGTGAGTAACTTTCTTTCTCACTATCTCCAATACTACGAAGAGAAATCAGTTGCCATGTCCGTGGCCGGTGACGATATATATGATTTCTTCTCTCCACCATGGCTCAGCTCATACGAGAAACTCATCCTCTGGATCGGAGGTTTTAAACCAGGTATGGTTTTTAAGCTCATAACCACTTCTGTTAATGACCTTACGAGCCACCAAATAGACCAACTCGAGAGCATTCGGTTAGAGACTAAACGGAGGGAGAGAGATTTGATGCGAAGGTTCGCGCTTCTACAACAGAGCGTGGGGGATCCACTTCTGATGGTTCCATTTAGGCGCATCGGAGTGTTGAGGCTTGGCGAAGGAGAGCAGCCAGAAATGGAGGATGCAATGGAGGTTTTGAAGGTAGAGATGATTAAAGCGATGAAGAACGCTGATCAACTCCGGTGTGTGACGGTTGGGAAAGTGGTGGAGGTTCTGAATCCACGGCAGTCGATCAAGCTGCTAAGAGCCGCTGGAGAGTTTTATCTCCGGCTGAGAGATTTAGGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

225

Amino Acids

25.94

Weight (kDa)

5.49

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 41 - 104 4.9e-17 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 410
AciI CCGC 1 cut(s) 636
AclWI GGATC 3 cut(s) 278, 428, 441
AcoI YGGCCR 1 cut(s) 201
AgsI TTSAA 2 cut(s) 43, 526
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 5 cut(s) 18, 36, 246, 304, 625
AluI AGCT 5 cut(s) 18, 36, 246, 304, 625
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 278, 428, 441
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 15, 493, 625
AspLEI GCGC 2 cut(s) 412, 462
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 353
BamHI GGATCC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 27, 505, 612
BccI CCATC 1 cut(s) 439
BceAI ACGGC 2 cut(s) 42, 626
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 16, 494, 626, 636
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 4 cut(s) 17, 495, 627, 637
Bme1390I CCNGG 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 435, 450
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 387, 471, 499
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 198, 236, 608
BsaWI WCCGGW 1 cut(s) 567
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 198, 236, 608
BseGI GGATG 2 cut(s) 261, 514
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 256, 650
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 27, 505, 612
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 3 cut(s) 204, 568, 655
BsmAI GTCTC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 353
Bsp143I GATC 4 cut(s) 270, 433, 559, 618
Bsp1720I GCTNAGC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 1 cut(s) 636
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 255, 651
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 435, 450
BspPI GGATC 3 cut(s) 278, 428, 441
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 198, 236, 608
BssMI GATC 4 cut(s) 270, 433, 559, 618
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 242, 629, 659
BstDSI CCRYGG 3 cut(s) 198, 236, 608
BstF5I GGATG 2 cut(s) 261, 514
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 2 cut(s) 412, 462
BstKTI GATC 4 cut(s) 273, 436, 562, 621
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 270, 433, 559, 618
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 27, 505, 612
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 3 cut(s) 198, 236, 608
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 2 cut(s) 261, 514
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 412, 462
Cfr10I RCCGGY 1 cut(s) 203
CsiI ACCWGGT 1 cut(s) 286
CviAII CATG 2 cut(s) 193, 237
DdeI CTNAG 3 cut(s) 242, 629, 659
DpnI GATC 4 cut(s) 272, 435, 561, 620
DpnII GATC 4 cut(s) 270, 433, 559, 618
DraI TTTAAA 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 2 cut(s) 196, 240
FaiI YATR 8 cut(s) 194, 215, 217, 219, 238, 250, 293, 308
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 2 cut(s) 192, 236
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 16, 494, 626, 636
FokI GGATG 2 cut(s) 248, 521
Fsp4HI GCNGC 4 cut(s) 16, 494, 626, 636
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 411, 461
GluI GCNGC 4 cut(s) 16, 494, 626, 636
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 1 cut(s) 203
HapII CCGG 3 cut(s) 204, 568, 655
HhaI GCGC 2 cut(s) 412, 462
Hin1II CATG 2 cut(s) 196, 240
Hin6I GCGC 2 cut(s) 410, 460
HinP1I GCGC 2 cut(s) 410, 460
HinfI GANTC 2 cut(s) 131, 604
HpaII CCGG 3 cut(s) 204, 568, 655
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 5 cut(s) 22, 275, 444, 467, 603
Hpy188III TCNNGA 2 cut(s) 268, 355
HpyAV CCTTC 3 cut(s) 396, 479, 520
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 2 cut(s) 86, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 242, 629, 659
Hsp92II CATG 2 cut(s) 196, 240
HspAI GCGC 2 cut(s) 410, 460
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 270, 433, 559, 618
Lsp1109I GCAGC 3 cut(s) 27, 505, 612
LweI GCATC 3 cut(s) 387, 471, 499
MabI ACCWGGT 1 cut(s) 286
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 5 cut(s) 59, 112, 143, 206, 574
MalI GATC 4 cut(s) 272, 435, 561, 620
MboI GATC 4 cut(s) 270, 433, 559, 618
MboII GAAGA 6 cut(s) 31, 137, 140, 188, 217, 562
MflI RGATCY 1 cut(s) 433
MluCI AATT 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 269, 275, 375, 468, 499, 511, 589
MseI TTAA 4 cut(s) 282, 300, 321, 540
MslI CAYNNNNRTG 2 cut(s) 197, 467
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 3 cut(s) 204, 568, 655
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 236
NdeII GATC 4 cut(s) 270, 433, 559, 618
NlaIII CATG 2 cut(s) 196, 240
NlaIV GGNNCC 2 cut(s) 435, 450
NmuCI GTSAC 3 cut(s) 59, 206, 574
PaeR7I CTCGAG 1 cut(s) 353
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 131, 604
PkrI GCNGC 4 cut(s) 17, 495, 627, 637
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 435, 450
PsuI RGATCY 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 197, 467
SaqAI TTAA 4 cut(s) 282, 300, 321, 540
SatI GCNGC 4 cut(s) 16, 494, 626, 636
Sau3AI GATC 4 cut(s) 270, 433, 559, 618
ScrFI CCNGG 1 cut(s) 288
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 3 cut(s) 387, 471, 499
Sfr274I CTCGAG 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 197, 467
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 636
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 354, 617
TasI AATT 1 cut(s) 68
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 2 cut(s) 131, 604
Tru1I TTAA 4 cut(s) 282, 300, 321, 540
Tru9I TTAA 4 cut(s) 282, 300, 321, 540
TseFI GTSAC 3 cut(s) 59, 206, 574
TseI GCWGC 3 cut(s) 15, 493, 625
Tsp45I GTSAC 3 cut(s) 59, 206, 574
TspDTI ATGAA 2 cut(s) 114, 563
TspGWI ACGGA 2 cut(s) 187, 394
XhoI CTCGAG 1 cut(s) 353
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.