Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Reverse (-)

58652643 .. 58652855

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGATTCTACGCATGGCGGAGACCTCCGCTGGGGACTTGAATTCCGACCAGGCGAGGGAACTGGACCGTCTGAACCTGGAGACGCAGAGGAGCGAGAGGGAGCTGTCGGAGACAATGGCGAGGATTCAAGAGAGCGTGGCGACGCCGCCGATTTTGGAGACGGCGAGGAAAGTGGGGAGGTTGATGGACAGTTTAGATTTCGACGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

4.56

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	17, 27, 146
AcsI	RAATTY	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	30, 55
AgsI	TTSAA	2 cut(s)	40, 128
AjnI	CCWGG	2 cut(s)	48, 75
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	4 cut(s)	14, 74, 104, 152
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	50, 77
BcoDI	GTCTC	4 cut(s)	14, 74, 104, 152
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	50, 77
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	50, 77
BpmI	CTGGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 55
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	50, 77
BseLI	CCNNNNNNNGG	2 cut(s)	30, 55
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	30, 55
BsmAI	GTCTC	4 cut(s)	14, 74, 104, 152
BsmBI	CGTCTC	2 cut(s)	74, 152
BsmFI	GGGAC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	17, 27, 146
BspTNI	GGTCTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	50, 77
Bst4CI	ACNGT	2 cut(s)	68, 191
BstACI	GRCGYC	1 cut(s)	143
BstMAI	GTCTC	4 cut(s)	14, 74, 104, 152
BstNI	CCWGG	2 cut(s)	50, 77
BstSCI	CCNGG	2 cut(s)	48, 75
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	91, 151
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	48, 75
Esp3I	CGTCTC	2 cut(s)	74, 152
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	98
HgaI	GACGC	2 cut(s)	91, 151
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	2 cut(s)	4, 124
Hpy188I	TCNGA	3 cut(s)	46, 72, 109
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	2 cut(s)	145, 206
HpyCH4III	ACNGT	2 cut(s)	68, 191
HpyCH4IV	ACGT	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	90, 100
LpnPI	CCDG	6 cut(s)	15, 35, 47, 62, 62, 89
MaeII	ACGT	1 cut(s)	204
MluCI	AATT	1 cut(s)	40
MmeI	TCCRAC	3 cut(s)	69, 87, 187
MnlI	CCTC	7 cut(s)	34, 48, 81, 90, 114, 159, 171
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	50, 77
MvaI	CCWGG	2 cut(s)	50, 77
NlaIII	CATG	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	4, 124
PkrI	GCNGC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	48, 75
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	2 cut(s)	48, 75
PspPI	GGNCC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	50, 77
SetI	ASST	5 cut(s)	26, 78, 105, 182, 207
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	3 cut(s)	17, 27, 146
StyD4I	CCNGG	2 cut(s)	48, 75
TaaI	ACNGT	2 cut(s)	68, 191
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	40
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	4, 124
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.