Rh3DG122800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002774
Physical Location & Seq
Forward (+)
10386379 .. 10387080
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG122800.1

Sequence Viewer

Length: 702 bp
ATGACCTCATTCGAGGCATTCTTCGAGGGCTGGCTGGTTCGGCAAGAGCACTACTTGGACGAACTCCAATCGGCCCAGCAGCGAGCCCATGAAGCCCGCGACGTCGATCTGAGAGACCTGGTCTCTCGGGTGCTGATCCATTACCAGCAATACTACGATGAGAAATCGAGAATTGCGCAGAGAGATGTGTTCCTGGTGTTTTCTCCGACTTGGTTCACTTCGCTTGAGCGGGCCCTGCTCTGGATCGCCGGGTTCAAGCCGGGTCTGGCATTCCGGCTGGTCTCGGACTCCGTACCCGACTTGTCCGCGGACCAGCGGGTCCGGATGACCCGGCTCGTCGAGGAGACCCGGGTCGAGGAGCGCGCGCTGGATGATAAGCTGGCCAAGATTCACGAGAGCGTGGCGGCCCCACCGCTCGTCGACGTGGCGCGTCGCCACGCGCGGTGTTTGGACGGTGAGACTGCGGAGGAGGAGGAGGAGGCGGCGACGCGGTCGTTGAAGTCGGCATTGGAGGGCGTGCTGGCGAATGCGAATTTGCTGAGGACGACTCTAGCTGCCAAGCTGGTGGAGATGCTGAGCGGCGCTCAGGCGGTTCGGTTTTTGGTCGCGGTGGCTCAGTTTCAGCTCAAGATTAGGAACTGGGGATTGCAGAGGGACGCCGCCGAGAAACAGCGGCGGTCCGGCGGAGGAGGACGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

233

Amino Acids

26.52

Weight (kDa)

6.55

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 94 2.4e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 177
AccBSI CCGCTC 3 cut(s) 229, 415, 579
AccI GTMKAC 1 cut(s) 420
AccII CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 2 cut(s) 130, 251
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 2 cut(s) 102, 657
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 240, 355
AgsI TTSAA 2 cut(s) 256, 499
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 117, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 4 cut(s) 379, 554, 562, 625
AluI AGCT 4 cut(s) 379, 554, 562, 625
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 5 cut(s) 108, 127, 286, 338, 452
AlwI GGATC 2 cut(s) 130, 251
Ama87I CYCGRG 2 cut(s) 126, 348
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 4 cut(s) 72, 231, 381, 405
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 79, 554
ApoI RAATTY 1 cut(s) 532
AspLEI GCGC 8 cut(s) 178, 363, 365, 367, 430, 442, 584, 699
AspS9I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 678
AsuC2I CCSGG 5 cut(s) 250, 261, 331, 349, 350
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 126, 348
AvaII GGWCC 3 cut(s) 310, 319, 678
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 88, 235
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 91, 541
BciT130I CCWGG 2 cut(s) 119, 194
BcnI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BcoDI GTCTC 5 cut(s) 108, 127, 286, 338, 452
BfaI CTAG 2 cut(s) 551, 700
BfoI RGCGCY 2 cut(s) 585, 700
BisI GCNGC 7 cut(s) 80, 405, 483, 555, 580, 660, 674
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 7 cut(s) 81, 406, 484, 556, 581, 661, 675
Bme1390I CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
Bme18I GGWCC 3 cut(s) 310, 319, 678
BmeT110I CYCGRG 2 cut(s) 126, 348
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 678
BmiI GGNNCC 3 cut(s) 233, 320, 408
BmrFI CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 4 cut(s) 532, 564, 568, 600
Bpu10I CCTNAGC 2 cut(s) 539, 585
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 245, 611
BpuMI CCSGG 5 cut(s) 250, 261, 331, 349, 350
BsaHI GRCGYC 2 cut(s) 102, 657
BsaI GGTCTC 4 cut(s) 108, 127, 286, 338
BsaJI CCNNGG 2 cut(s) 306, 348
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 355
Bse1I ACTGG 1 cut(s) 644
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 2 cut(s) 119, 194
BseDI CCNNGG 2 cut(s) 306, 348
BseGI GGATG 2 cut(s) 330, 376
BseLI CCNNNNNNNGG 2 cut(s) 240, 355
BseMII CTCAG 5 cut(s) 101, 530, 566, 599, 629
BseNI ACTGG 1 cut(s) 644
BsePI GCGCGC 2 cut(s) 361, 363
BseRI GAGGAG 7 cut(s) 356, 371, 482, 485, 488, 491, 702
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 91, 541
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
Bsh1285I CGRYCG 1 cut(s) 494
BshFI GGCC 4 cut(s) 74, 233, 383, 407
BsiEI CGRYCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 126, 348
BsiSI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 681
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 2 cut(s) 240, 355
BsmAI GTCTC 5 cut(s) 108, 127, 286, 338, 452
BsmFI GGGAC 1 cut(s) 668
BsmI GAATGC 3 cut(s) 17, 269, 532
BsnI GGCC 4 cut(s) 74, 233, 383, 407
Bso31I GGTCTC 4 cut(s) 108, 127, 286, 338
BsoBI CYCGRG 2 cut(s) 126, 348
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 51, 88, 235
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 106, 135, 243
Bsp1720I GCTNAGC 1 cut(s) 575
BspANI GGCC 4 cut(s) 74, 233, 383, 407
BspCNI CTCAG 5 cut(s) 102, 531, 567, 598, 628
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
BspLI GGNNCC 3 cut(s) 233, 320, 408
BspPI GGATC 2 cut(s) 130, 251
BspTNI GGTCTC 4 cut(s) 108, 127, 286, 338
BsrBI CCGCTC 3 cut(s) 229, 415, 579
BsrI ACTGG 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 306, 348
BssHII GCGCGC 2 cut(s) 361, 363
BssMI GATC 3 cut(s) 106, 135, 243
BssNI GRCGYC 2 cut(s) 102, 657
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 119, 194
Bst4CI ACNGT 1 cut(s) 455
BstACI GRCGYC 2 cut(s) 102, 657
BstC8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 518, 522
BstDEI CTNAG 5 cut(s) 110, 539, 575, 585, 615
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 330, 376
BstFNI CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
BstH2I RGCGCY 2 cut(s) 585, 700
BstHHI GCGC 8 cut(s) 178, 363, 365, 367, 430, 442, 584, 699
BstKTI GATC 3 cut(s) 109, 138, 246
BstMAI GTCTC 5 cut(s) 108, 127, 286, 338, 452
BstMBI GATC 3 cut(s) 106, 135, 243
BstMCI CGRYCG 1 cut(s) 494
BstMWI GCNNNNNNNGC 3 cut(s) 40, 92, 235
BstNI CCWGG 2 cut(s) 119, 194
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 7 cut(s) 117, 192, 248, 259, 329, 347, 348
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
BstV1I GCAGC 2 cut(s) 91, 541
BstXI CCANNNNNNTGG 1 cut(s) 565
BsuRI GGCC 4 cut(s) 74, 233, 383, 407
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 330, 376
Cac8I GCNNGC 9 cut(s) 32, 84, 97, 231, 363, 365, 381, 518, 522
CfoI GCGC 8 cut(s) 178, 363, 365, 367, 430, 442, 584, 699
Cfr13I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 678
Cfr42I CCGCGG 1 cut(s) 309
Cfr9I CCCGGG 1 cut(s) 348
CpoI CGGWCCG 1 cut(s) 678
CseI GACGC 3 cut(s) 419, 496, 665
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 293
CspI CGGWCCG 1 cut(s) 678
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 110, 539, 575, 585, 615
DpnI GATC 3 cut(s) 108, 137, 245
DpnII GATC 3 cut(s) 106, 135, 243
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 381
EciI GGCGGA 1 cut(s) 699
Eco24I GRGCYC 2 cut(s) 88, 235
Eco31I GGTCTC 4 cut(s) 108, 127, 286, 338
Eco47I GGWCC 3 cut(s) 310, 319, 678
Eco88I CYCGRG 2 cut(s) 126, 348
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 117, 192
EcoT38I GRGCYC 2 cut(s) 88, 235
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 1 cut(s) 668
FatI CATG 1 cut(s) 88
FauI CCCGC 3 cut(s) 104, 222, 309
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 7 cut(s) 80, 405, 483, 555, 580, 660, 674
FokI GGATG 2 cut(s) 337, 383
FriOI GRGCYC 2 cut(s) 88, 235
Fsp4HI GCNGC 7 cut(s) 80, 405, 483, 555, 580, 660, 674
FspBI CTAG 2 cut(s) 551, 700
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 8 cut(s) 177, 362, 364, 366, 429, 441, 583, 698
GluI GCNGC 7 cut(s) 80, 405, 483, 555, 580, 660, 674
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 2 cut(s) 585, 700
HaeIII GGCC 4 cut(s) 74, 233, 383, 407
HapII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 681
HgaI GACGC 3 cut(s) 419, 496, 665
HhaI GCGC 8 cut(s) 178, 363, 365, 367, 430, 442, 584, 699
Hin1I GRCGYC 2 cut(s) 102, 657
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 8 cut(s) 176, 361, 363, 365, 428, 440, 582, 697
HinP1I GCGC 8 cut(s) 176, 361, 363, 365, 428, 440, 582, 697
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 3 cut(s) 287, 388, 547
HpaII CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 681
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 216, 421
Hpy188I TCNGA 3 cut(s) 111, 207, 286
Hpy188III TCNNGA 5 cut(s) 168, 241, 322, 392, 628
Hpy8I GTNNAC 2 cut(s) 216, 421
Hpy99I CGWCG 7 cut(s) 104, 107, 341, 422, 425, 435, 490
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 102, 423
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 92, 235
HpyF3I CTNAG 5 cut(s) 110, 539, 575, 585, 615
HpySE526I ACGT 2 cut(s) 102, 423
Hsp92I GRCGYC 2 cut(s) 102, 657
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 8 cut(s) 176, 361, 363, 365, 428, 440, 582, 697
Kpn2I TCCGGA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 3 cut(s) 106, 135, 243
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 91, 541
LweI GCATC 1 cut(s) 561
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 2 cut(s) 551, 700
MaeII ACGT 2 cut(s) 102, 423
MalI GATC 3 cut(s) 108, 137, 245
MbiI CCGCTC 3 cut(s) 229, 415, 579
MboI GATC 3 cut(s) 106, 135, 243
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 51, 88, 235
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 171, 532
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 281, 541
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 3 cut(s) 308, 316, 673
MspI CCGG 7 cut(s) 249, 260, 274, 322, 331, 349, 681
MspR9I CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
Mva1269I GAATGC 3 cut(s) 17, 269, 532
MvaI CCWGG 2 cut(s) 119, 194
MvnI CGCG 9 cut(s) 99, 308, 363, 365, 430, 440, 442, 490, 608
MwoI GCNNNNNNNGC 3 cut(s) 40, 92, 235
NciI CCSGG 5 cut(s) 250, 261, 331, 349, 350
NdeII GATC 3 cut(s) 106, 135, 243
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 3 cut(s) 233, 320, 408
NmeAIII GCCGAG 1 cut(s) 688
NsbI TGCGCA 1 cut(s) 177
PauI GCGCGC 2 cut(s) 361, 363
PctI GAATGC 3 cut(s) 17, 269, 532
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 119, 490
PkrI GCNGC 7 cut(s) 81, 406, 484, 556, 581, 661, 675
PleI GAGTC 2 cut(s) 281, 541
PpsI GAGTC 2 cut(s) 281, 541
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 117, 192
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 117, 192
PspN4I GGNNCC 3 cut(s) 233, 320, 408
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 678
PsyI GACNNNGTC 2 cut(s) 119, 490
PteI GCGCGC 2 cut(s) 361, 363
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Rsr2I CGGWCCG 1 cut(s) 678
RsrII CGGWCCG 1 cut(s) 678
SacII CCGCGG 1 cut(s) 309
SalI GTCGAC 1 cut(s) 419
SatI GCNGC 7 cut(s) 80, 405, 483, 555, 580, 660, 674
Sau3AI GATC 3 cut(s) 106, 135, 243
Sau96I GGNCC 7 cut(s) 73, 231, 232, 310, 319, 406, 678
SchI GAGTC 2 cut(s) 281, 541
ScrFI CCNGG 7 cut(s) 119, 194, 250, 261, 331, 349, 350
SduI GDGCHC 3 cut(s) 51, 88, 235
SetI ASST 8 cut(s) 8, 105, 120, 381, 426, 556, 564, 627
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 561
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 3 cut(s) 310, 319, 678
SmaI CCCGGG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 224, 626
SmoI CTYRAG 2 cut(s) 224, 626
Sse9I AATT 2 cut(s) 171, 532
SspMI CTAG 2 cut(s) 551, 700
StyD4I CCNGG 7 cut(s) 117, 192, 248, 259, 329, 347, 348
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 2 cut(s) 105, 426
TaqI TCGA 7 cut(s) 12, 24, 105, 167, 339, 354, 420
TasI AATT 2 cut(s) 171, 532
TauI GCSGC 5 cut(s) 407, 485, 582, 662, 676
TfiI GAWTC 1 cut(s) 388
TseI GCWGC 2 cut(s) 79, 554
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 280
TspMI CCCGGG 1 cut(s) 348
Tth111I GACNNNGTC 2 cut(s) 119, 490
VpaK11BI GGWCC 3 cut(s) 310, 319, 678
XapI RAATTY 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 2 cut(s) 551, 700
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.