Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Reverse (-)

18629647 .. 18630141

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAACCTTGCTCTCGAAGTATCCTCACTCATTAGCATTACTTGCCCACAAAGCAAATCAAAAACCAAAATCCCAAAAGAAATCCCCCACCTTTCGAATCCCACCTCCTATTTAATCCCACCCATCTCTCTGTTTTTCGTCGCCATTAAAACCCTAGAAAGCTTTGCTGTTTTTGTTTTGGTTATGACAAACGGTTCTCAAAGCGGCAATGCGTCAAACACATTCGAGGCATTCTACGAGGGCTGGCTGGTCCGACAAGAACACTTCCTCGATGAGCTCTTATCGGCCCAACAAACTATCGACGAGGCCCGAGATGAAGACCTCCGAGATTTGGTGTGTCGGGTTCTCTCTATTACCAGCAGTTTTACGACGAGAAATCGCAACTTGGACAGTGGGACGTTTTACTGGTTTTCTCGCCGACGTGGTATACTTCCTACGAAAGGAGCCTGCTTTGGATCGCCGGGTACAAACCGGGTATCATATTCCGGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

165

Amino Acids

18.28

Weight (kDa)

7.72

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	463
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	331, 440
AjiI	CACGTC	1 cut(s)	422
AluBI	AGCT	2 cut(s)	162, 277
AluI	AGCT	2 cut(s)	162, 277
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	2 cut(s)	285, 306
AspS9I	GGNCC	3 cut(s)	250, 286, 307
AsuC2I	CCSGG	2 cut(s)	462, 473
AsuII	TTCGAA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	462, 473
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	462, 473
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	250, 286, 307
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	462, 473
BpiI	GAAGAC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	462, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 440
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	331, 440
BseMI	GCAATG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	287, 308
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	3 cut(s)	461, 472, 486
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	331, 440
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	287, 308
BsoBI	CYCGRG	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	455
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	287, 308
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	463
BspT104I	TTCGAA	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	1 cut(s)	455
BssNAI	GTATAC	1 cut(s)	428
BssSI	CACGAG	1 cut(s)	490
Bst1107I	GTATAC	1 cut(s)	428
Bst2BI	CACGAG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	194, 392
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	245, 448
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstKTI	GATC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstSCI	CCNGG	2 cut(s)	460, 471
BstV2I	GAAGAC	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	287, 308
BtrI	CACGTC	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	245, 448
Cfr13I	GGNCC	3 cut(s)	250, 286, 307
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	465
CviJI	RGCY	8 cut(s)	162, 243, 247, 277, 287, 308, 446, 489
CviKI_1	RGCY	8 cut(s)	162, 243, 247, 277, 287, 308, 446, 489
CviQI	GTAC	1 cut(s)	465
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	279
FaiI	YATR	3 cut(s)	185, 428, 481
FaqI	GGGAC	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	287, 308
HapII	CCGG	3 cut(s)	461, 472, 486
HgaI	GACGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	3 cut(s)	461, 472, 486
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	254, 326
Hpy188III	TCNNGA	2 cut(s)	14, 492
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	4 cut(s)	143, 305, 373, 423
HpyCH4III	ACNGT	2 cut(s)	194, 392
HpyCH4IV	ACGT	2 cut(s)	398, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpySE526I	ACGT	2 cut(s)	398, 421
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	7 cut(s)	229, 233, 370, 391, 460, 474, 485
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	398, 421
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MboII	GAAGA	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	34, 115, 220, 232, 278, 298, 332
MseI	TTAA	2 cut(s)	113, 147
MspI	CCGG	3 cut(s)	461, 472, 486
MspR9I	CCNGG	2 cut(s)	462, 473
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NciI	CCSGG	2 cut(s)	462, 473
NdeII	GATC	1 cut(s)	455
NlaIV	GGNNCC	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	95
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	250, 286, 307
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	113, 147
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	3 cut(s)	250, 286, 307
ScrFI	CCNGG	2 cut(s)	462, 473
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	8 cut(s)	9, 93, 107, 164, 279, 324, 401, 424
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	250
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	460, 471
TaaI	ACNGT	2 cut(s)	194, 392
TaiI	ACGT	2 cut(s)	401, 424
TaqI	TCGA	5 cut(s)	15, 95, 225, 270, 300
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	113, 147
Tru9I	TTAA	2 cut(s)	113, 147
TscAI	CASTG	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	17, 330
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.