RchiOBHm_Chr7g0232581

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002774
Physical Location & Seq
Forward (+)
56662059 .. 56662755
697 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20847

Sequence Viewer

Length: 354 bp
ATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAACCGGACCAGGCAAGGGAGCTGGAGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGGAGACGGCGAGGAGAGTGGGGAGGTTGATGGACGGTAAGATTTCGACGTTGGATGAGGCGATGGAGGCGCTGAAGGCGAAGATGCTGAGGTTGACTGAGAGCGCCGACGGACTTCGTGGGTCGACGGCGAGGAAGGTGGTGGAGGTTTTGAGTCCGAGTCAGAGTGAAGGTTTTGGTGGAAGTGTAGTTATTTGCTATGTGGTATTTGCTCTGAACAGCAGCTACCACATTTTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

5.86

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 236
AciI CCGC 2 cut(s) 98, 104
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 2 cut(s) 61, 336
AluI AGCT 2 cut(s) 61, 336
Alw26I GTCTC 2 cut(s) 14, 110
ApeKI GCWGC 1 cut(s) 333
AspLEI GCGC 3 cut(s) 103, 184, 218
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 136, 169
BceAI ACGGC 2 cut(s) 135, 255
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 14, 110
BfoI RGCGCY 3 cut(s) 104, 185, 219
BisI GCNGC 3 cut(s) 99, 104, 334
BlsI GCNGC 3 cut(s) 100, 105, 335
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 186
BpmI CTGGAG 2 cut(s) 83, 134
Bpu10I CCTNAGC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 191, 201
BseRI GAGGAG 2 cut(s) 80, 139
BseXI GCAGC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 2 cut(s) 14, 110
BsmBI CGTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 14
BspACI CCGC 2 cut(s) 98, 104
BspCNI CTCAG 2 cut(s) 192, 202
BspLI GGNNCC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 14
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 200, 210
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 3 cut(s) 104, 185, 219
BstHHI GCGC 3 cut(s) 103, 184, 218
BstMAI GTCTC 2 cut(s) 14, 110
BstMWI GCNNNNNNNGC 2 cut(s) 179, 188
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 172
CfoI GCGC 3 cut(s) 103, 184, 218
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 1 cut(s) 13
CviJI RGCY 2 cut(s) 61, 336
CviKI_1 RGCY 2 cut(s) 61, 336
DdeI CTNAG 2 cut(s) 200, 210
DinI GGCGCC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 48
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 312
FatI CATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 99, 104, 334
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 99, 104, 334
GlaI GCGC 3 cut(s) 102, 183, 217
GluI GCNGC 3 cut(s) 99, 104, 334
GsuI CTGGAG 2 cut(s) 83, 134
HaeII RGCGCY 3 cut(s) 104, 185, 219
HapII CCGG 1 cut(s) 44
HhaI GCGC 3 cut(s) 103, 184, 218
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 3 cut(s) 101, 182, 216
HinP1I GCGC 3 cut(s) 101, 182, 216
HincII GTYRAC 2 cut(s) 207, 237
HindII GTYRAC 2 cut(s) 207, 237
HinfI GANTC 5 cut(s) 4, 82, 109, 265, 271
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 207, 237
Hpy188I TCNGA 3 cut(s) 270, 276, 327
Hpy188III TCNNGA 4 cut(s) 19, 32, 86, 113
Hpy8I GTNNAC 2 cut(s) 207, 237
Hpy99I CGWCG 3 cut(s) 163, 224, 241
HpyAV CCTTC 3 cut(s) 181, 241, 275
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 188
HpyF3I CTNAG 2 cut(s) 200, 210
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 3 cut(s) 101, 182, 216
KasI GGCGCC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 7 cut(s) 17, 35, 47, 57, 62, 71, 98
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 186
MaeII ACGT 1 cut(s) 161
MboII GAAGA 1 cut(s) 205
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 2 cut(s) 274, 280
MmeI TCCRAC 1 cut(s) 144
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 179, 188
NarI GGCGCC 1 cut(s) 101
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 3 cut(s) 4, 82, 109
PkrI GCNGC 3 cut(s) 100, 105, 335
PleI GAGTC 2 cut(s) 273, 279
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 2 cut(s) 273, 279
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 46
PsrI GAACNNNNNNTAC 2 cut(s) 320, 352
SalI GTCGAC 1 cut(s) 235
SatI GCNGC 3 cut(s) 99, 104, 334
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 2 cut(s) 274, 280
ScrFI CCNGG 1 cut(s) 50
SetI ASST 9 cut(s) 26, 63, 140, 164, 206, 252, 261, 286, 338
SfaNI GCATC 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 102
SinI GGWCC 1 cut(s) 46
SsiI CCGC 2 cut(s) 98, 104
SspDI GGCGCC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 164
TaqI TCGA 3 cut(s) 18, 158, 236
TauI GCSGC 2 cut(s) 101, 106
TfiI GAWTC 3 cut(s) 4, 82, 109
TseI GCWGC 1 cut(s) 333
TspGWI ACGGA 2 cut(s) 16, 237
VpaK11BI GGWCC 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.