Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Forward (+)

53112133 .. 53112911

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCTCACCCAATCCGAGAGCGCTTTGTCGTTTTTCTCCAAGACTTGCTACTCCGGCAGCAAGCCAGACTTGCTCGACCAACTCCTACTCTGCTATGCTCTGCTTCAGTCAAAGACGACGACGACGACCGTCAGAGGCATTTGATCGAACAGGTTCTGTGCCACTACCAGCACTACTTCCACGAGAAATCCCGCACCGTCGAGGAGGACCGCGCCTTGCTCTGGCTCGCCGGCTTCAAGCCCTCGATGATTCTACGCATGGTCGAGACCTCCGTTCAGGACTTGAAACCGGACCAGGGGAGGGAGCTGGAGGAGCGAGAGGGAGCTGGAGGAGAAAATGGCGAGGATTCAGGAGAGCGTGGCGGCGCCGCCGATTCTGGAGACGGCGAGCAGAGCGCTGAAGGCGAAGATGCTGAGAGCGCCGACGGACTTCGTGGGTCGACGGCGAGGAAGGTGGTGGAGGTTTTGAGTCCGAGTCAGACTGTGAAAGTTTTGGCGGCAGTGGCGCAGTTTCAGCTCAGAATTCGAAGTTGGGGGTTGCAGAGAGCCAGAGAGACTAGCAGAGCTGACGAGTTTTTTGCGTTTTTGTTTCCTTTTATTGGGTTTGGAAAATGGGCCAATTGGAATAATGTTAGGCCCAACCTAAAACTGGGTCAATCTTTTTTTGTCCTTTCATTGTCCTTCTGTCTAATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

232

Amino Acids

26.11

Weight (kDa)

5.48

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	213
AciI	CCGC	5 cut(s)	193, 211, 363, 369, 497
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	2 cut(s)	90, 420
AcyI	GRCGYC	1 cut(s)	366
AfeI	AGCGCT	2 cut(s)	23, 397
AfiI	CCNNNNNNNGG	5 cut(s)	222, 296, 301, 599, 649
AgsI	TTSAA	2 cut(s)	238, 286
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	4 cut(s)	307, 326, 517, 566
AluI	AGCT	4 cut(s)	307, 326, 517, 566
Alw26I	GTCTC	4 cut(s)	9, 260, 375, 548
AlwNI	CAGNNNCTG	1 cut(s)	157
Aor51HI	AGCGCT	2 cut(s)	23, 397
AoxI	GGCC	2 cut(s)	615, 635
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	6 cut(s)	24, 215, 368, 398, 422, 508
AspS9I	GGNCC	4 cut(s)	208, 292, 615, 636
AsuII	TTCGAA	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	208, 292
BanI	GGYRCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	400, 459
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	4 cut(s)	9, 260, 375, 548
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	4 cut(s)	25, 369, 399, 423
BisI	GCNGC	4 cut(s)	59, 364, 369, 498
BlsI	GCNGC	4 cut(s)	60, 365, 370, 499
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	208, 292
BmgT120I	GGNCC	4 cut(s)	208, 292, 615, 636
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	659
BoxI	GACNNNNGTC	1 cut(s)	129
BpmI	CTGGAG	3 cut(s)	329, 348, 399
Bpu14I	TTCGAA	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 296, 301, 599, 649
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	295
BseLI	CCNNNNNNNGG	5 cut(s)	222, 296, 301, 599, 649
BseMII	CTCAG	2 cut(s)	405, 532
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	3 cut(s)	218, 326, 345
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	617, 637
BshNI	GGYRCC	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	55, 231, 290
BslI	CCNNNNNNNGG	5 cut(s)	222, 296, 301, 599, 649
BsmAI	GTCTC	4 cut(s)	9, 260, 375, 548
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	617, 637
Bso31I	GGTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	5 cut(s)	193, 211, 363, 369, 497
BspANI	GGCC	2 cut(s)	617, 637
BspCNI	CTCAG	2 cut(s)	406, 531
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	131, 199, 484
BstACI	GRCGYC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	63, 228, 232, 389
BstDEI	CTNAG	2 cut(s)	414, 518
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	4 cut(s)	25, 369, 399, 423
BstHHI	GCGC	6 cut(s)	24, 215, 368, 398, 422, 508
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	4 cut(s)	9, 260, 375, 548
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 71, 313, 393, 402, 419, 503, 514
BstNI	CCWGG	1 cut(s)	296
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	617, 637
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	4 cut(s)	63, 228, 232, 389
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	6 cut(s)	24, 215, 368, 398, 422, 508
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	4 cut(s)	208, 292, 615, 636
CviAII	CATG	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	414, 518
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	208, 292
Eco47III	AGCGCT	2 cut(s)	23, 397
Eco57I	CTGAAG	2 cut(s)	90, 420
EcoRI	GAATTC	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	97, 260
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	4 cut(s)	59, 364, 369, 498
Fsp4HI	GCNGC	4 cut(s)	59, 364, 369, 498
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	6 cut(s)	23, 214, 367, 397, 421, 507
GluI	GCNGC	4 cut(s)	59, 364, 369, 498
GsuI	CTGGAG	3 cut(s)	329, 348, 399
HaeII	RGCGCY	4 cut(s)	25, 369, 399, 423
HaeIII	GGCC	2 cut(s)	617, 637
HapII	CCGG	3 cut(s)	55, 231, 290
HhaI	GCGC	6 cut(s)	24, 215, 368, 398, 422, 508
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	6 cut(s)	22, 213, 366, 396, 420, 506
HinP1I	GCGC	6 cut(s)	22, 213, 366, 396, 420, 506
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	5 cut(s)	250, 347, 374, 469, 475
HpaII	CCGG	3 cut(s)	55, 231, 290
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	5 cut(s)	17, 135, 474, 480, 521
Hpy188III	TCNNGA	4 cut(s)	265, 278, 351, 378
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	6 cut(s)	122, 125, 128, 203, 428, 445
HpyAV	CCTTC	3 cut(s)	395, 445, 691
HpyCH4III	ACNGT	3 cut(s)	131, 199, 484
HpyCH4V	TGCA	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 71, 313, 393, 402, 419, 503, 514
HpyF3I	CTNAG	2 cut(s)	414, 518
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	6 cut(s)	22, 213, 366, 396, 420, 506
KasI	GGCGCC	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	304, 313, 323
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	558
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	619
MluCI	AATT	3 cut(s)	522, 619, 690
Mly113I	GGCGCC	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	478, 484
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	153
MspI	CCGG	3 cut(s)	55, 231, 290
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	8 cut(s)	55, 71, 313, 393, 402, 419, 503, 514
NaeI	GCCGGC	1 cut(s)	232
NarI	GGCGCC	1 cut(s)	366
NdeII	GATC	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 270
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	250, 347, 374
PkrI	GCNGC	4 cut(s)	60, 365, 370, 499
PleI	GAGTC	2 cut(s)	477, 483
PluTI	GGCGCC	1 cut(s)	369
PpsI	GAGTC	2 cut(s)	477, 483
PshAI	GACNNNNGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	4 cut(s)	208, 292, 615, 636
PstNI	CAGNNNCTG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	439
SatI	GCNGC	4 cut(s)	59, 364, 369, 498
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	4 cut(s)	208, 292, 615, 636
SchI	GAGTC	2 cut(s)	478, 484
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	9 cut(s)	156, 272, 309, 328, 456, 465, 519, 568, 645
SfaNI	GCATC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	2 cut(s)	208, 292
Sse9I	AATT	3 cut(s)	522, 619, 690
SsiI	CCGC	5 cut(s)	193, 211, 363, 369, 497
SspDI	GGCGCC	1 cut(s)	365
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	131, 199, 484
TaqI	TCGA	7 cut(s)	76, 147, 201, 245, 264, 440, 526
TasI	AATT	3 cut(s)	522, 619, 690
TauI	GCSGC	3 cut(s)	366, 371, 500
TfiI	GAWTC	3 cut(s)	250, 347, 374
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	663
TspGWI	ACGGA	2 cut(s)	262, 441
TspRI	CASTG	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	208, 292
XapI	RAATTY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.