Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002774

Physical Location & Seq

Genomic Coordinates Forward (+)

12545506 .. 12545805

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATGCGGTGCGGCGATACGGGAGGGCCGGCCACGGGGAGATTGTGGAGGACGACGCGGTGATCAAGTCGCTTAAGTCGGCATTGGAGACCGTGGTGGAGAATGCCAACTTGCTGAGGACGACGATGGCGACGAAGCTGGTGGATTTGCTGAGCTCGGGGCAGGCTGTGAGGTTTCTGACGGCAGTGATGCAGTTTCAGCTAAAGATTCGGTGTTTGGGGTTGGAGAGGGACGCCGAGAAGCAGCGGGAAATGAGCGGAGGTGGTGGTGGTTGGAGTCCAATTAGTAGTAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

100

Amino Acids

10.88

Weight (kDa)

8.98

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09950 AT1G58330
fragaria_vesca	FvH4_6g11270
malus_domestica	MD03G1039500.v1.1 MD04G1155800.v1.1 MD11G1040000.v1.1 MD12G1170000.v1.1
prunus_persica	Prupe.1G542200_v2.0.a1 Prupe.6G279300_v2.0.a1
pyrus_communis	pycom04g14060 pycom11g03470 pycom12g10500 pycom12g10510 pycom12g16050 pycom12g16230 pycom16g21070
rosa_chinensis	RchiOBHm_Chr3g0462811 RchiOBHm_Chr7g0232201 RchiOBHm_Chr7g0232581
rosa_laevigata	RLG00000001322 RLG00000024831
rosa_multiflora	Rmu_sc0000766.1_g000007 Rmu_sc0009174.1_g000002 Rmu_sc0039562.1_g000001 Rmu_sc0041171.1_g000001 Rmu_ssc0000471.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228180 Rroxscaffold_6G00417190
rosa_rugosa	Rorug03G0059300
rosa_samantha	Rh3AG117400 Rh3BG121200 Rh3CG124100 Rh3DG122800 Rh7AG429700 Rh7CG448600 Rh7DG416800 Rh7DG419500
rosa_wichuraiana	Rw3G009950 Rw7G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	59
AciI	CCGC	5 cut(s)	8, 13, 59, 247, 258
AcoI	YGGCCR	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	139, 156, 202
AluI	AGCT	3 cut(s)	139, 156, 202
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	27, 31
ApeKI	GCWGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	14, 245
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	15, 246
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	34, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	34, 93
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	107, 143
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	29, 33
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	29, 33
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	5 cut(s)	8, 13, 59, 247, 258
BspANI	GGCC	2 cut(s)	29, 33
BspCNI	CTCAG	2 cut(s)	108, 144
BspFNI	CGCG	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	34, 93
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	31, 165
BstDEI	CTNAG	2 cut(s)	116, 152
BstDSI	CCRYGG	2 cut(s)	34, 93
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	29, 33
BtgI	CCRYGG	2 cut(s)	34, 93
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	31, 165
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	2 cut(s)	65, 242
CviJI	RGCY	6 cut(s)	29, 33, 139, 156, 167, 202
CviKI_1	RGCY	6 cut(s)	29, 33, 139, 156, 167, 202
DdeI	CTNAG	2 cut(s)	116, 152
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	158
FaqI	GGGAC	1 cut(s)	245
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	14, 245
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	158
FseI	GGCCGGCC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	14, 245
GluI	GCNGC	2 cut(s)	14, 245
HaeIII	GGCC	2 cut(s)	29, 33
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	65, 242
Hin1I	GRCGYC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	208, 277
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	180
Hpy99I	CGWCG	3 cut(s)	59, 127, 136
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	116, 152
Hsp92I	GRCGYC	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	43, 125, 149
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	180
MalI	GATC	1 cut(s)	65
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	204, 254
MnlI	CCTC	6 cut(s)	18, 43, 111, 165, 222, 254
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	109
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	29
NmeAIII	GCCGAG	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 131
PctI	GAATGC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	15, 246
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	27
RigI	GGCCGGCC	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	14, 245
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	6 cut(s)	141, 158, 176, 204, 265, 296
SfaNI	GCATC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	5 cut(s)	8, 13, 59, 247, 258
SstI	GAGCTC	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	282
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.