Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

5593270 .. 5595814

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCAACAAAGAAACATAATTTGTTGGCTAACTTTGCTTCATCAGATTCAAGATTTACCCAACAGGAGCTTCCAGCATGCAAACCAATTCTTACTCCAAAATGGGTGATTCTGACTTTTCTTGTCTCGGGTGTTGTCTTTATTCCTCTGGGAGTGATTTGTCTATTTGCTTCTCAGGGTGTCATCGAAATTGTTGATCGATATGACACAGACTGCATTCCATTATCCTCTAGGGATAACAAAGTCCGATACATACAGGGCTTGGAAGATAAGAGGTGTAACAGAACAATAACGGTGACAAAAACTATGAAGAATCCGGTCTACGTATATTATCAGCTAGAGAACTATTACCAAAACCATCGACGGTATGTGAAAAGTCGACAAGATGGACAACTGAGAAGTCCAAAAGATGAACACGAAACCAAATCATGTGCCCCGGAGGATACACTAGGTGGTCAACCTATTGTTCCTTGTGGTCTTGTTGCTTGGAGTTTGTTCAATGATACTTATGATTTCACTAGAAACAACCAAAAACTTCCAGTGAATAAGAAAGACATCTCGTGGAAGAGTGATAGAGAATCAAAGTTTGGTAAAAATGTCTTCCCAAAAAATTTCCAGAAAGGATCTCTCATCGGCGGTAAAAGTCTTGATCAAGATATTCCATTGAGTGAGCAAGAAGATCTAATTGTCTGGATGCGAACCGCGGCTTTACCAACATTTAGAAAGCTGTATGGCAAAATAGACACTGATCTTCAAGCTGGAGATACGATAAAGGTCTTGTTGCAGAATAATTACAACACTTATAGCTTTAATGGGAAAAAGAAGCTTGTGCTATCTACCACTAGCTGGCTCGGTGGAAGGAATGATTTCCTTGGGATTGCGTATTTGACTGTTGGTAGCATATGCTTGTTCTTGGCTGTTTCCTTCTCCGTCTTGTATCTAGCAAAACCAAGGCAACTGGGAGATCCATCGTACTTGTCATGGAACAGAAGTGCTGGAGGTGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

336

Amino Acids

38.07

Weight (kDa)

9.37

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	55 - 206	1.7e-44	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccI	GTMKAC	2 cut(s)	321, 379
AccII	CGCG	1 cut(s)	704
AciI	CCGC	3 cut(s)	636, 702, 704
AclWI	GGATC	2 cut(s)	631, 959
AcsI	RAATTY	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	974
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgsI	TTSAA	3 cut(s)	51, 499, 755
AjuI	GAANNNNNNNTTGG	4 cut(s)	54, 86, 570, 602
AluBI	AGCT	7 cut(s)	70, 337, 727, 758, 807, 826, 846
AluI	AGCT	7 cut(s)	70, 337, 727, 758, 807, 826, 846
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	631, 959
Ama87I	CYCGRG	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	866
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	118, 307
AvaI	CYCGRG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	592
BccI	CCATC	3 cut(s)	366, 380, 976
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	6 cut(s)	231, 338, 449, 519, 843, 941
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	1 cut(s)	705
BlsI	GCNGC	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	1 cut(s)	684
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	1 cut(s)	592
BpmI	CTGGAG	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	4 cut(s)	435, 702, 871, 950
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	2 cut(s)	539, 963
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	4 cut(s)	435, 702, 871, 950
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMII	CTCAG	2 cut(s)	188, 386
BseNI	ACTGG	2 cut(s)	539, 963
BseSI	GKGCMC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	704
BshVI	ATCGAT	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	317, 437
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
BspACI	CCGC	3 cut(s)	636, 702, 704
BspCNI	CTCAG	2 cut(s)	187, 387
BspDI	ATCGAT	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	704
BspPI	GGATC	2 cut(s)	631, 959
BsrI	ACTGG	2 cut(s)	539, 963
BssECI	CCNNGG	4 cut(s)	435, 702, 871, 950
BssMI	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
BssSI	CACGAG	1 cut(s)	559
BssT1I	CCWWGG	2 cut(s)	871, 950
Bst2BI	CACGAG	1 cut(s)	559
Bst4CI	ACNGT	3 cut(s)	295, 366, 892
Bst6I	CTCTTC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	79, 848
BstDEI	CTNAG	2 cut(s)	174, 395
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	704
BstKTI	GATC	6 cut(s)	199, 626, 652, 682, 751, 967
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	436
BstSNI	TACGTA	1 cut(s)	325
BstUI	CGCG	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	3 cut(s)	623, 679, 964
BstYI	RGATCY	3 cut(s)	623, 679, 964
Bsu15I	ATCGAT	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	436
BsuTUI	ATCGAT	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	699
BtsIMutI	CAGTG	2 cut(s)	546, 744
Cac8I	GCNNGC	2 cut(s)	79, 848
Cfr42I	CCGCGG	1 cut(s)	705
ClaI	ATCGAT	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	973
CviAII	CATG	3 cut(s)	78, 429, 981
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	2 cut(s)	174, 395
DpnI	GATC	6 cut(s)	198, 625, 651, 681, 750, 966
DpnII	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco105I	TACGTA	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	871, 950
Eco88I	CYCGRG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	871, 950
ErhI	CCWWGG	2 cut(s)	871, 950
FaeI	CATG	3 cut(s)	81, 432, 984
FatI	CATG	3 cut(s)	77, 428, 980
FauNDI	CATATG	1 cut(s)	902
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	321, 379
Fnu4HI	GCNGC	1 cut(s)	705
FokI	GGATG	1 cut(s)	706
Fsp4HI	GCNGC	1 cut(s)	705
FspBI	CTAG	6 cut(s)	231, 338, 449, 519, 843, 941
GluI	GCNGC	1 cut(s)	705
GsuI	CTGGAG	1 cut(s)	780
HapII	CCGG	2 cut(s)	317, 437
Hin1II	CATG	3 cut(s)	81, 432, 984
HincII	GTYRAC	3 cut(s)	6, 380, 458
HindII	GTYRAC	3 cut(s)	6, 380, 458
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	4 cut(s)	47, 109, 313, 578
HpaII	CCGG	2 cut(s)	317, 437
HphI	GGTGA	2 cut(s)	118, 307
Hpy166II	GTNNAC	4 cut(s)	6, 322, 380, 458
Hpy188I	TCNGA	3 cut(s)	46, 114, 248
Hpy188III	TCNNGA	5 cut(s)	51, 616, 647, 653, 691
Hpy8I	GTNNAC	4 cut(s)	6, 322, 380, 458
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	852, 934
HpyCH4III	ACNGT	3 cut(s)	295, 366, 892
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	81, 216, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	174, 395
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	81, 432, 984
Ksp22I	TGATCA	1 cut(s)	649
KspI	CCGCGG	1 cut(s)	705
Kzo9I	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
LmnI	GCTCC	1 cut(s)	67
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	6 cut(s)	231, 338, 449, 519, 843, 941
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	278, 295
MalI	GATC	6 cut(s)	198, 625, 651, 681, 750, 966
MboI	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
MboII	GAAGA	6 cut(s)	278, 322, 577, 592, 689, 743
MflI	RGATCY	3 cut(s)	623, 679, 964
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	6 cut(s)	19, 87, 189, 610, 684, 790
MnlI	CCTC	5 cut(s)	156, 238, 267, 433, 992
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	1 cut(s)	810
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	317, 437
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	902
NdeII	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
NlaIII	CATG	3 cut(s)	81, 432, 984
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	4 cut(s)	47, 109, 313, 578
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	1 cut(s)	706
Ppu21I	YACGTR	1 cut(s)	325
PsuI	RGATCY	3 cut(s)	623, 679, 964
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
SacII	CCGCGG	1 cut(s)	705
SalI	GTCGAC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	1 cut(s)	705
Sau3AI	GATC	6 cut(s)	196, 623, 649, 679, 748, 964
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	684
Sfr303I	CCGCGG	1 cut(s)	705
SgrBI	CCGCGG	1 cut(s)	705
SnaBI	TACGTA	1 cut(s)	325
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	6 cut(s)	19, 87, 189, 610, 684, 790
SsiI	CCGC	3 cut(s)	636, 702, 704
SspMI	CTAG	6 cut(s)	231, 338, 449, 519, 843, 941
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	871, 950
TaaI	ACNGT	3 cut(s)	295, 366, 892
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	186, 199, 361, 379
TasI	AATT	6 cut(s)	19, 87, 189, 610, 684, 790
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	4 cut(s)	47, 109, 313, 578
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	2 cut(s)	546, 751
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	30, 323, 426
TspGWI	ACGGA	1 cut(s)	919
TspRI	CASTG	2 cut(s)	546, 751
Van91I	CCANNNNNTGG	1 cut(s)	846
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	81
XmiI	GTMKAC	2 cut(s)	321, 379
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	6 cut(s)	231, 338, 449, 519, 843, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.