Rh5BG165000

ALA-interacting subunit 3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
17252447 .. 17256992
4546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG165000.1

Sequence Viewer

Length: 1053 bp
ATGAGTTCCAATACGGCGCCGTCCAGCTCAGCGGGCGCTGGATCTGCCGATTCAGCTGCTACCAGGAGGTCCAAGCGGCCCAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAAATGGGTCATCTCAGCATTCATGCTCGTTGCAATCGTCTTCATTCCCATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATCGTTGATCGATATGAAACTGAGTGCATACCAGCGTCCTCTAGAAGTGATAAGGTCAAATACATCCAAACCCCAGGAAATAAACCATGCAACAGAACTCTGACGGTAAAAAAATACATGAAGCAGCCTATATATGTGTACTACCAGCTTGATAATTTCTATCAGAATCACCGCAGGTATGTTAAGAGCCGAAGCGATAAACAGTTGAAAGATCCAAACTCTGCAAGTACAGTGACTGATTGTAAGCCTGAAGACAAGGCAAATGGTGGTGTGCCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTCAATGACACTTATAGTTTTTCCCGCAACCAAAGCGAGCCATTGCCGGTGAACAAGAAGGGTATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAAGGTCTTTCCTACGAACTTTCAGAATTCAACTCTTAGAGGTGGTGCGTCTCTCAATGAATCCATTCCATTGAGTGAGCAGGAGGACCTTATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGAAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGAGAACAATTACAACACCTACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGAAATCCAGGAGGGCACTAA

Protein Analysis

350

Amino Acids

39.29

Weight (kDa)

9.6

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 68 - 334 1e-92 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 891
AciI CCGC 5 cut(s) 32, 76, 400, 562, 942
AclWI GGATC 4 cut(s) 49, 434, 801, 1004
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 2 cut(s) 629, 664
AcuI CTGAAG 2 cut(s) 498, 782
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 4 cut(s) 368, 457, 510, 876
AfiI CCNNNNNNNGG 1 cut(s) 891
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 5 cut(s) 90, 227, 436, 541, 669
AhlI ACTAGT 1 cut(s) 887
AjnI CCWGG 3 cut(s) 62, 301, 1039
AluBI AGCT 5 cut(s) 27, 56, 376, 527, 871
AluI AGCT 5 cut(s) 27, 56, 376, 527, 871
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 4 cut(s) 49, 434, 801, 1004
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 77, 960
ApeKI GCWGC 3 cut(s) 56, 352, 749
ApoI RAATTY 2 cut(s) 629, 664
Asp700I GAANNNNTTC 2 cut(s) 702, 911
AspLEI GCGC 2 cut(s) 19, 38
AspS9I GGNCC 3 cut(s) 69, 78, 724
AsuHPI GGTGA 2 cut(s) 389, 598
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 69, 724
BaeGI GKGCMC 1 cut(s) 1050
BalI TGGCCA 1 cut(s) 962
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 522
BbsI GAAGAC 2 cut(s) 169, 486
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 43, 364, 736
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 4, 30
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 3 cut(s) 64, 303, 1041
BcoDI GTCTC 1 cut(s) 693
BcuI ACTAGT 1 cut(s) 887
BfaI CTAG 2 cut(s) 270, 888
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 2 cut(s) 20, 39
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 4 cut(s) 57, 77, 353, 750
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 4 cut(s) 58, 78, 354, 751
Bme1390I CCNGG 3 cut(s) 64, 303, 1041
Bme18I GGWCC 2 cut(s) 69, 724
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 69, 78, 724
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 3 cut(s) 64, 303, 1041
BpiI GAAGAC 2 cut(s) 169, 486
Bpu1102I GCTNAGC 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 301, 916, 963, 995
Bsc4I CCNNNNNNNGG 1 cut(s) 891
Bse118I RCCGGY 1 cut(s) 583
Bse3DI GCAATG 3 cut(s) 578, 752, 921
BseBI CCWGG 3 cut(s) 64, 303, 1041
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 301, 916, 963, 995
BseGI GGATG 2 cut(s) 291, 744
BseLI CCNNNNNNNGG 1 cut(s) 891
BseMI GCAATG 3 cut(s) 578, 752, 921
BseMII CTCAG 4 cut(s) 42, 113, 165, 240
BseSI GKGCMC 1 cut(s) 1050
BseXI GCAGC 3 cut(s) 43, 364, 736
BshFI GGCC 2 cut(s) 79, 962
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 891
BsmAI GTCTC 1 cut(s) 693
BsmBI CGTCTC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 79, 962
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 522, 627, 1050
Bsp143I GATC 5 cut(s) 41, 235, 439, 793, 1009
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 5 cut(s) 32, 76, 400, 562, 942
BspANI GGCC 2 cut(s) 79, 962
BspCNI CTCAG 4 cut(s) 41, 112, 164, 241
BspDI ATCGAT 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 4 cut(s) 49, 434, 801, 1004
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 3 cut(s) 578, 752, 921
BsrFI RCCGGY 1 cut(s) 583
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 4 cut(s) 301, 916, 963, 995
BssMI GATC 5 cut(s) 41, 235, 439, 793, 1009
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 3 cut(s) 916, 963, 995
Bst2UI CCWGG 3 cut(s) 64, 303, 1041
Bst4CI ACNGT 5 cut(s) 334, 432, 460, 851, 937
Bst6I CTCTTC 1 cut(s) 605
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 4 cut(s) 34, 118, 122, 575
BstDEI CTNAG 5 cut(s) 28, 99, 151, 249, 674
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 2 cut(s) 291, 744
BstH2I RGCGCY 2 cut(s) 20, 39
BstHHI GCGC 2 cut(s) 19, 38
BstKTI GATC 5 cut(s) 44, 238, 442, 796, 1012
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 5 cut(s) 41, 235, 439, 793, 1009
BstMWI GCNNNNNNNGC 5 cut(s) 33, 44, 53, 570, 948
BstNI CCWGG 3 cut(s) 64, 303, 1041
BstNSI RCATGY 2 cut(s) 120, 821
BstSCI CCNGG 3 cut(s) 62, 301, 1039
BstSFI CTRYAG 1 cut(s) 847
BstSLI GKGCMC 1 cut(s) 1050
BstV1I GCAGC 3 cut(s) 43, 364, 736
BstV2I GAAGAC 2 cut(s) 169, 486
BstX2I RGATCY 4 cut(s) 41, 439, 793, 1009
BstYI RGATCY 4 cut(s) 41, 439, 793, 1009
Bsu15I ATCGAT 1 cut(s) 238
BsuRI GGCC 2 cut(s) 79, 962
BsuTUI ATCGAT 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 963
BtsCI GGATG 2 cut(s) 291, 744
BtsIMutI CAGTG 2 cut(s) 465, 933
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 4 cut(s) 34, 118, 122, 575
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 2 cut(s) 19, 38
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 3 cut(s) 69, 78, 724
ClaI ATCGAT 1 cut(s) 238
CseI GACGC 2 cut(s) 252, 675
Csp6I GTAC 4 cut(s) 367, 456, 509, 875
CviAII CATG 9 cut(s) 117, 160, 315, 346, 513, 606, 818, 964, 1026
CviQI GTAC 4 cut(s) 367, 456, 509, 875
DdeI CTNAG 5 cut(s) 28, 99, 151, 249, 674
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 43, 237, 441, 795, 1011
DpnII GATC 5 cut(s) 41, 235, 439, 793, 1009
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
Eco130I CCWWGG 3 cut(s) 916, 963, 995
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 69, 724
Eco57I CTGAAG 2 cut(s) 498, 782
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 724
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 3 cut(s) 62, 301, 1039
EcoT14I CCWWGG 3 cut(s) 916, 963, 995
EcoT38I GRGCYC 1 cut(s) 522
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 3 cut(s) 916, 963, 995
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 9 cut(s) 120, 163, 318, 349, 516, 609, 821, 967, 1029
FatI CATG 9 cut(s) 116, 159, 314, 345, 512, 605, 817, 963, 1025
FauI CCCGC 3 cut(s) 25, 569, 935
Fnu4HI GCNGC 4 cut(s) 57, 77, 353, 750
FokI GGATG 2 cut(s) 278, 751
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 4 cut(s) 57, 77, 353, 750
FspBI CTAG 2 cut(s) 270, 888
GlaI GCGC 2 cut(s) 18, 37
GluI GCNGC 4 cut(s) 57, 77, 353, 750
HaeII RGCGCY 2 cut(s) 20, 39
HaeIII GGCC 2 cut(s) 79, 962
HapII CCGG 1 cut(s) 584
HgaI GACGC 2 cut(s) 252, 675
HhaI GCGC 2 cut(s) 19, 38
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 9 cut(s) 120, 163, 318, 349, 516, 609, 821, 967, 1029
Hin6I GCGC 2 cut(s) 17, 36
HinP1I GCGC 2 cut(s) 17, 36
HinfI GANTC 3 cut(s) 50, 394, 698
HpaII CCGG 1 cut(s) 584
HphI GGTGA 2 cut(s) 389, 598
Hpy166II GTNNAC 2 cut(s) 367, 589
Hpy188I TCNGA 5 cut(s) 191, 330, 393, 663, 767
Hpy188III TCNNGA 3 cut(s) 90, 213, 270
Hpy8I GTNNAC 2 cut(s) 367, 589
HpyAV CCTTC 2 cut(s) 589, 1023
HpyCH4III ACNGT 5 cut(s) 334, 432, 460, 851, 937
HpyCH4V TGCA 6 cut(s) 120, 170, 255, 318, 452, 752
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 44, 53, 570, 948
HpyF3I CTNAG 5 cut(s) 28, 99, 151, 249, 674
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 9 cut(s) 120, 163, 318, 349, 516, 609, 821, 967, 1029
HspAI GCGC 2 cut(s) 17, 36
KasI GGCGCC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 41, 235, 439, 793, 1009
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 3 cut(s) 43, 364, 736
MaeI CTAG 2 cut(s) 270, 888
MaeIII GTNAC 3 cut(s) 460, 614, 820
MalI GATC 5 cut(s) 43, 237, 441, 795, 1011
MboI GATC 5 cut(s) 41, 235, 439, 793, 1009
MboII GAAGA 5 cut(s) 169, 491, 622, 788, 793
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 4 cut(s) 41, 439, 793, 1009
MhlI GDGCHC 3 cut(s) 522, 627, 1050
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 7 cut(s) 126, 382, 629, 664, 770, 835, 975
MluNI TGGCCA 1 cut(s) 962
Mly113I GGCGCC 1 cut(s) 17
MnlI CCTC 6 cut(s) 60, 277, 671, 715, 781, 1037
Mox20I TGGCCA 1 cut(s) 962
MroXI GAANNNNTTC 2 cut(s) 702, 911
MscI TGGCCA 1 cut(s) 962
MseI TTAA 2 cut(s) 411, 990
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 2 cut(s) 32, 56
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 3 cut(s) 64, 303, 1041
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 3 cut(s) 64, 303, 1041
MwoI GCNNNNNNNGC 5 cut(s) 33, 44, 53, 570, 948
NarI GGCGCC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 963
NdeII GATC 5 cut(s) 41, 235, 439, 793, 1009
NlaIII CATG 9 cut(s) 120, 163, 318, 349, 516, 609, 821, 967, 1029
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 3 cut(s) 460, 614, 820
NspI RCATGY 2 cut(s) 120, 821
PaeI GCATGC 1 cut(s) 120
PciI ACATGT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 2 cut(s) 702, 911
PfeI GAWTC 3 cut(s) 50, 394, 698
PflMI CCANNNNNTGG 1 cut(s) 891
PfoI TCCNGGA 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 58, 78, 354, 751
PluTI GGCGCC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 724
PscI ACATGT 1 cut(s) 817
Psp5II RGGWCCY 1 cut(s) 724
Psp6I CCWGG 3 cut(s) 62, 301, 1039
PspGI CCWGG 3 cut(s) 62, 301, 1039
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 69, 78, 724
PspPPI RGGWCCY 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 4 cut(s) 41, 439, 793, 1009
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 4 cut(s) 368, 457, 510, 876
RsaNI GTAC 4 cut(s) 367, 456, 509, 875
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 2 cut(s) 411, 990
SatI GCNGC 4 cut(s) 57, 77, 353, 750
Sau3AI GATC 5 cut(s) 41, 235, 439, 793, 1009
Sau96I GGNCC 3 cut(s) 69, 78, 724
ScrFI CCNGG 3 cut(s) 64, 303, 1041
SduI GDGCHC 3 cut(s) 522, 627, 1050
SfcI CTRYAG 1 cut(s) 847
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 2 cut(s) 69, 724
SmiMI CAYNNNNRTG 1 cut(s) 818
SpeI ACTAGT 1 cut(s) 887
SphI GCATGC 1 cut(s) 120
Sse9I AATT 7 cut(s) 126, 382, 629, 664, 770, 835, 975
SsiI CCGC 5 cut(s) 32, 76, 400, 562, 942
SspDI GGCGCC 1 cut(s) 16
SspI AATATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 270, 888
StyD4I CCNGG 3 cut(s) 62, 301, 1039
StyI CCWWGG 3 cut(s) 916, 963, 995
TaaI ACNGT 5 cut(s) 334, 432, 460, 851, 937
TaqI TCGA 1 cut(s) 238
TasI AATT 7 cut(s) 126, 382, 629, 664, 770, 835, 975
TatI WGTACW 2 cut(s) 366, 455
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 3 cut(s) 50, 394, 698
Tru1I TTAA 2 cut(s) 411, 990
Tru9I TTAA 2 cut(s) 411, 990
TscAI CASTG 2 cut(s) 465, 940
TseFI GTSAC 3 cut(s) 460, 614, 820
TseI GCWGC 3 cut(s) 56, 352, 749
Tsp45I GTSAC 3 cut(s) 460, 614, 820
TspDTI ATGAA 6 cut(s) 148, 169, 258, 362, 594, 711
TspRI CASTG 2 cut(s) 465, 940
Van91I CCANNNNNTGG 1 cut(s) 891
VpaK11BI GGWCC 2 cut(s) 69, 724
XapI RAATTY 2 cut(s) 629, 664
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 2 cut(s) 120, 821
XmnI GAANNNNTTC 2 cut(s) 702, 911
XspI CTAG 2 cut(s) 270, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.