pycom09g18820

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001483
Physical Location & Seq
Reverse (-)
19568985 .. 19572268
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18820.6

Sequence Viewer

Length: 1017 bp
ATGCATGTGTCTTATAATATGAATATTTTCAAACGCATTACAGATTCCCAGTTCACACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTAACACCAGCATGGGTCATATTAATATTTGTCGCAATCGGCATTGTCTTTTTACCCATTGGATTTGCTTCCTTATTTGCATCAGAGCACGTGGTGGAAATCGTCGACCACTATGATAGAGATTGCGTTCCTCCTAATTATGTGGATAATAAGCTTGCATATATTCAGAGTAGTAAAACTAACAAGACATGTATTAGGAGAGTGACTATTCCGAAGCAAATGAAATCTCCCGTTTACATTTACTACCAGCTTGATCACTTCTATCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGACGGTCAGTTGCGGAGCAAGTCCAATGAAAAGAAAACAGATACGTGTGCTCCTGAACGTTATACAGCAAATGGTGCAATTGTTCCGTGTGGTCTCGTTGCATGGAGTTTGTTTAACGACACATACAAGTTTTCAGTGAATAACAAACAACTAGGGGTCAGCAAAAAGGACATCACGTGGAAAAGTGACCCTAAGAAAAAATTTGGCTCGGACGTCTATCCTAAGAATTTTCAGAGCGGGGGTTTGATTGGAGGAGCAAAACTGAATTCTAGCATACCTCTGAGTGAACAAGAAGATCTTATGGTTTGGATGCGAACTTCAGCATTGCCAACTTTCAGAAAACTATATGGGAAAATAGAAGCGGACCTTGAAGCCGATGACGTAGTAACTGTGACAATAGAGAATAATTATAACACCTACATCTTTGGTGGCAATAAGAAGCTGGTACTTTCAACCGCAAGTTGGATTGGCGGAAAGAATTGTCTACTAGGCATAGCATACCTTACTGTTGGTGGACTGTGTTTGTTCTTGGCTATAAGCTTCTTACTTCTCTATCTCTTCAAGCCAAGGCCTCTTGGGGATACATCGTACTTGTCTTGGAACAGAAGTGCACCAGGAGGACACATATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

339

Amino Acids

38.18

Weight (kDa)

9.28

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 795
AatII GACGTC 1 cut(s) 600
AccBSI CCGCTC 1 cut(s) 621
AccI GTMKAC 2 cut(s) 192, 868
AciI CCGC 5 cut(s) 397, 621, 746, 840, 855
AclI AACGTT 1 cut(s) 442
AcsI RAATTY 3 cut(s) 584, 610, 649
AcuI CTGAAG 1 cut(s) 687
AcvI CACGTG 2 cut(s) 178, 561
AcyI GRCGYC 1 cut(s) 597
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 2 cut(s) 831, 974
AfiI CCNNNNNNNGG 1 cut(s) 846
AflIII ACRYGT 2 cut(s) 275, 428
AgsI TTSAA 4 cut(s) 31, 755, 837, 946
AjnI CCWGG 1 cut(s) 997
AluBI AGCT 6 cut(s) 67, 74, 241, 337, 826, 924
AluI AGCT 6 cut(s) 67, 74, 241, 337, 826, 924
Alw21I GWGCWC 3 cut(s) 177, 436, 997
Alw26I GTCTC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 993
AoxI GGCC 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 993
ApoI RAATTY 3 cut(s) 584, 610, 649
AseI ATTAAT 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 748
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 997
BbrPI CACGTG 2 cut(s) 178, 561
Bbv12I GWGCWC 3 cut(s) 177, 436, 997
BciT130I CCWGG 1 cut(s) 999
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 4 cut(s) 536, 654, 872, 1015
BfuI GTATCC 1 cut(s) 958
BglII AGATCT 1 cut(s) 679
Bme1390I CCNGG 1 cut(s) 999
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 1 cut(s) 748
BmrFI CCNGG 1 cut(s) 999
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 176, 684
BmuI ACTGGG 1 cut(s) 43
BsaAI YACGTR 3 cut(s) 178, 429, 561
BsaHI GRCGYC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 950
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 846
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 707
BseBI CCWGG 1 cut(s) 999
BseDI CCNNGG 1 cut(s) 950
BseGI GGATG 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 846
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 651
BseSI GKGCMC 1 cut(s) 997
BshFI GGCC 1 cut(s) 955
BsiHKAI GWGCWC 3 cut(s) 177, 436, 997
BslI CCNNNNNNNGG 1 cut(s) 846
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 1 cut(s) 955
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 3 cut(s) 177, 436, 997
Bsp143I GATC 2 cut(s) 340, 679
BspACI CCGC 5 cut(s) 397, 621, 746, 840, 855
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 707
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 950
BssMI GATC 2 cut(s) 340, 679
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 950
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 4 cut(s) 389, 775, 892, 903
Bst6I CTCTTC 1 cut(s) 947
BstACI GRCGYC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 3 cut(s) 178, 429, 561
BstC8I GCNNGC 2 cut(s) 76, 243
BstDEI CTNAG 3 cut(s) 576, 606, 665
BstF5I GGATG 1 cut(s) 699
BstKTI GATC 2 cut(s) 343, 682
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 340, 679
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 999
BstNSI RCATGY 2 cut(s) 8, 279
BstSCI CCNGG 1 cut(s) 997
BstSLI GKGCMC 1 cut(s) 997
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 1 cut(s) 955
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 2 cut(s) 76, 243
Cfr13I GGNCC 1 cut(s) 748
Csp6I GTAC 2 cut(s) 830, 973
CviAII CATG 4 cut(s) 5, 99, 276, 486
CviQI GTAC 2 cut(s) 830, 973
DdeI CTNAG 3 cut(s) 576, 606, 665
DpnI GATC 2 cut(s) 342, 681
DpnII GATC 2 cut(s) 340, 679
DraIII CACNNNGTG 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
EciI GGCGGA 1 cut(s) 870
Eco130I CCWWGG 1 cut(s) 950
Eco147I AGGCCT 1 cut(s) 955
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 687
Eco72I CACGTG 2 cut(s) 178, 561
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 950
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 950
FaeI CATG 4 cut(s) 8, 102, 279, 489
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 735, 767
FatI CATG 4 cut(s) 4, 98, 275, 485
FauI CCCGC 1 cut(s) 614
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 2 cut(s) 192, 868
FokI GGATG 1 cut(s) 706
FspBI CTAG 4 cut(s) 536, 654, 872, 1015
HaeIII GGCC 1 cut(s) 955
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 4 cut(s) 8, 102, 279, 489
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 239, 922
HinfI GANTC 2 cut(s) 44, 355
Hpy166II GTNNAC 7 cut(s) 54, 193, 322, 671, 869, 899, 995
Hpy188I TCNGA 8 cut(s) 172, 255, 300, 354, 595, 618, 666, 722
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 7 cut(s) 54, 193, 322, 671, 869, 899, 995
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 4 cut(s) 389, 775, 892, 903
HpyCH4IV ACGT 6 cut(s) 177, 428, 442, 560, 597, 765
HpyCH4V TGCA 7 cut(s) 4, 78, 167, 245, 461, 485, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 3 cut(s) 576, 606, 665
HpySE526I ACGT 6 cut(s) 177, 428, 442, 560, 597, 765
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 4 cut(s) 8, 102, 279, 489
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 340, 679
LmnI GCTCC 3 cut(s) 399, 439, 638
LpnPI CCDG 8 cut(s) 62, 84, 108, 347, 450, 812, 984, 1011
LweI GCATC 2 cut(s) 176, 684
MaeI CTAG 4 cut(s) 536, 654, 872, 1015
MaeII ACGT 6 cut(s) 177, 428, 442, 560, 597, 765
MaeIII GTNAC 5 cut(s) 289, 383, 569, 769, 775
MalI GATC 2 cut(s) 342, 681
MbiI CCGCTC 1 cut(s) 621
MboI GATC 2 cut(s) 340, 679
MboII GAAGA 2 cut(s) 689, 934
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 3 cut(s) 177, 436, 997
MluCI AATT 8 cut(s) 84, 223, 462, 584, 610, 649, 790, 862
MmeI TCCRAC 1 cut(s) 827
MnlI CCTC 5 cut(s) 228, 629, 672, 966, 995
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 4 cut(s) 89, 110, 372, 498
MslI CAYNNNNRTG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 999
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 999
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 2 cut(s) 340, 679
NlaIII CATG 4 cut(s) 8, 102, 279, 489
NmuCI GTSAC 4 cut(s) 289, 383, 569, 775
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 279
PceI AGGCCT 1 cut(s) 955
PciI ACATGT 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 44, 355
PmaCI CACGTG 2 cut(s) 178, 561
PmlI CACGTG 2 cut(s) 178, 561
Ppu21I YACGTR 3 cut(s) 178, 429, 561
PscI ACATGT 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 110
PsiI TTATAA 2 cut(s) 15, 795
Psp1406I AACGTT 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 997
PspCI CACGTG 2 cut(s) 178, 561
PspGI CCWGG 1 cut(s) 997
PspPI GGNCC 1 cut(s) 748
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 2 cut(s) 831, 974
RsaNI GTAC 2 cut(s) 830, 973
RseI CAYNNNNRTG 1 cut(s) 97
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 4 cut(s) 89, 110, 372, 498
Sau3AI GATC 2 cut(s) 340, 679
Sau96I GGNCC 1 cut(s) 748
ScrFI CCNGG 1 cut(s) 999
SduI GDGCHC 3 cut(s) 177, 436, 997
SfaNI GCATC 2 cut(s) 176, 684
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 8 cut(s) 84, 223, 462, 584, 610, 649, 790, 862
SseBI AGGCCT 1 cut(s) 955
SsiI CCGC 5 cut(s) 397, 621, 746, 840, 855
SspI AATATT 2 cut(s) 25, 114
SspMI CTAG 4 cut(s) 536, 654, 872, 1015
StuI AGGCCT 1 cut(s) 955
StyD4I CCNGG 1 cut(s) 997
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 4 cut(s) 389, 775, 892, 903
TaiI ACGT 6 cut(s) 180, 431, 445, 563, 600, 768
TaqI TCGA 1 cut(s) 192
TasI AATT 8 cut(s) 84, 223, 462, 584, 610, 649, 790, 862
TfiI GAWTC 2 cut(s) 44, 355
Tru1I TTAA 4 cut(s) 89, 110, 372, 498
Tru9I TTAA 4 cut(s) 89, 110, 372, 498
TscAI CASTG 1 cut(s) 525
TseFI GTSAC 4 cut(s) 289, 383, 569, 775
Tsp45I GTSAC 4 cut(s) 289, 383, 569, 775
TspDTI ATGAA 3 cut(s) 35, 323, 426
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 525
VneI GTGCAC 1 cut(s) 993
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 110
XapI RAATTY 3 cut(s) 584, 610, 649
XceI RCATGY 2 cut(s) 8, 279
XmiI GTMKAC 2 cut(s) 192, 868
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 4 cut(s) 536, 654, 872, 1015
ZraI GACGTC 1 cut(s) 598
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.