MD05G1238200.v1.1

ALA-interacting subunit 3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
36917307 .. 36921728
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1238200.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGAGTTCCAATACGGCGCCGTCAAGCTCAGGAGGCGCCGGATCTGCGGATGCAACGTCTACCAGGAGGCATTCCAAGCGACCCAAGTATTCAAGGTTTACTCAGCAGGAACTTCCAGCGTGTAAACCAATTCTGACGCCACGATGGGTGATCTCAGCATTCATGCTTGTAAGCATTGTATTCATTCCCATCGGAGTTGCTTCCCTTTTTGCTTCTCGAGATGTTGTTGAAATTGTTGATCGGTATGAAACTGATTGCATACCAGCACCTGCTAGAACCGATAAGGTCAGGTTCATCCAAAGCCCTGGACCTAAAAAATGCAACAGAACTCTGAAGGTATCAAAGCGTATGAAGCAGCCTATATATGTATATTATCAGCTTGACAATTTCTACCAGAATCATCGCAGATATGTAAAGAGTCGAAGTGATCAACAGTTGAAAGATCCAAAGTCTGAGAATGAAATAGATGCTTGTAAGCCTGAAGATAAGGCAAATGGTCTACCTATTGTACCTTGTGGTCTTATTGCTTGGAGTTTGTTCAACGACACATATGATTTCTCGCGCAATGGACAGCAGTTGATTGTAAACAAGAAGGATATCTCTTGGAAGAGTGATAGGGAGCACAAATTTGGCAAAAAGGTCTTCCCAAAGAACTTTCAGAATGGAACTCTTAAAGGTGGCGCGTCTCTCGATGCCTCCAAACCGTTAAGTGAGCAAGAGGACCTTATTGTTTGGATGAGAACTGCTGCACTACCAACATTTAGAAAGCTGTACGGGAAGATAGAGGTGGATCTGGAAGAAAATGATACGATAGAAGTGATACTGGATAACAATTACAACACATACAGTTTTAGTGGAAAAAAGAAGCTCGTGCTCTCGACCACCAGTTGGATTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTTGGAGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAGTTGTGTATCTCGTTAAGCCAAGGCAACTTGGAGACCCATCGTATTTGTCTTGGAACAGAAATCCGGGAGGTCACTAA

Protein Analysis

350

Amino Acids

39.4

Weight (kDa)

9.5

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 69 - 333 1.5e-89 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 277
Acc36I ACCTGC 1 cut(s) 277
AccB1I GGYRCC 2 cut(s) 16, 35
AccB7I CCANNNNNTGG 1 cut(s) 888
AccI GTMKAC 2 cut(s) 59, 499
AccII CGCG 2 cut(s) 562, 683
AciI CCGC 1 cut(s) 47
AclWI GGATC 3 cut(s) 49, 437, 798
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 2 cut(s) 353, 501
AcyI GRCGYC 3 cut(s) 17, 36, 137
AfaI GTAC 2 cut(s) 510, 773
AfiI CCNNNNNNNGG 1 cut(s) 888
AgsI TTSAA 4 cut(s) 93, 230, 439, 541
AjnI CCWGG 2 cut(s) 62, 304
AleI CACNNNNGTG 1 cut(s) 974
AluBI AGCT 4 cut(s) 27, 379, 769, 868
AluI AGCT 4 cut(s) 27, 379, 769, 868
Alw21I GWGCWC 2 cut(s) 624, 876
Alw26I GTCTC 2 cut(s) 690, 999
AlwI GGATC 3 cut(s) 49, 437, 798
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 1 cut(s) 957
ApeKI GCWGC 2 cut(s) 355, 746
ApoI RAATTY 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 4 cut(s) 19, 38, 564, 683
AspS9I GGNCC 2 cut(s) 308, 721
AsuC2I CCSGG 1 cut(s) 1038
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 2 cut(s) 308, 721
BalI TGGCCA 1 cut(s) 959
BanI GGYRCC 2 cut(s) 16, 35
BauI CACGAG 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 624, 876
BbvI GCAGC 2 cut(s) 367, 733
BccI CCATC 3 cut(s) 138, 197, 1018
BceAI ACGGC 2 cut(s) 4, 30
BciT130I CCWGG 2 cut(s) 64, 306
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 1038
BcoDI GTCTC 2 cut(s) 690, 999
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 20, 39
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 356, 747
BlsI GCNGC 2 cut(s) 357, 748
Bme1390I CCNGG 3 cut(s) 64, 306, 1038
Bme18I GGWCC 2 cut(s) 308, 721
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 308, 721
BmiI GGNNCC 2 cut(s) 18, 37
BmrFI CCNGG 3 cut(s) 64, 306, 1038
BmsI GCATC 3 cut(s) 40, 457, 682
BpiI GAAGAC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 1038
BsaHI GRCGYC 3 cut(s) 17, 36, 137
BsaI GGTCTC 1 cut(s) 999
BsaJI CCNNGG 4 cut(s) 304, 913, 960, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse1I ACTGG 2 cut(s) 828, 885
Bse3DI GCAATG 2 cut(s) 571, 918
BseBI CCWGG 2 cut(s) 64, 306
BseDI CCNNGG 4 cut(s) 304, 913, 960, 992
BseGI GGATG 3 cut(s) 55, 294, 741
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 2 cut(s) 571, 918
BseMII CTCAG 4 cut(s) 42, 116, 168, 444
BseNI ACTGG 2 cut(s) 828, 885
BseXI GCAGC 2 cut(s) 367, 733
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 2 cut(s) 562, 683
BshFI GGCC 1 cut(s) 959
BshNI GGYRCC 2 cut(s) 16, 35
BsiHKAI GWGCWC 2 cut(s) 624, 876
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 2 cut(s) 39, 1037
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 2 cut(s) 690, 999
BsmBI CGTCTC 1 cut(s) 690
BsmI GAATGC 2 cut(s) 70, 158
BsnI GGCC 1 cut(s) 959
Bso31I GGTCTC 1 cut(s) 999
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 624, 876
Bsp143I GATC 6 cut(s) 41, 150, 238, 427, 442, 790
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 4 cut(s) 41, 115, 167, 445
BspFNI CGCG 2 cut(s) 562, 683
BspLI GGNNCC 2 cut(s) 18, 37
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 3 cut(s) 49, 437, 798
BspT107I GGYRCC 2 cut(s) 16, 35
BspTNI GGTCTC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 571, 918
BsrI ACTGG 2 cut(s) 828, 885
BssECI CCNNGG 4 cut(s) 304, 913, 960, 992
BssMI GATC 6 cut(s) 41, 150, 238, 427, 442, 790
BssNI GRCGYC 3 cut(s) 17, 36, 137
BssSI CACGAG 1 cut(s) 869
BssT1I CCWWGG 3 cut(s) 913, 960, 992
Bst2BI CACGAG 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 64, 306
Bst4CI ACNGT 5 cut(s) 435, 705, 848, 934, 973
Bst6I CTCTTC 1 cut(s) 602
BstACI GRCGYC 3 cut(s) 17, 36, 137
BstDEI CTNAG 4 cut(s) 28, 102, 154, 453
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 3 cut(s) 55, 294, 741
BstFNI CGCG 2 cut(s) 562, 683
BstH2I RGCGCY 2 cut(s) 20, 39
BstHHI GCGC 4 cut(s) 19, 38, 564, 683
BstKTI GATC 6 cut(s) 44, 153, 241, 430, 445, 793
BstMAI GTCTC 2 cut(s) 690, 999
BstMBI GATC 6 cut(s) 41, 150, 238, 427, 442, 790
BstMWI GCNNNNNNNGC 4 cut(s) 33, 44, 76, 352
BstNI CCWGG 2 cut(s) 64, 306
BstSCI CCNGG 3 cut(s) 62, 304, 1036
BstUI CGCG 2 cut(s) 562, 683
BstV1I GCAGC 2 cut(s) 367, 733
BstV2I GAAGAC 1 cut(s) 634
BstX2I RGATCY 3 cut(s) 41, 442, 790
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 3 cut(s) 41, 442, 790
BsuRI GGCC 1 cut(s) 959
BtgI CCRYGG 1 cut(s) 960
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 3 cut(s) 55, 294, 741
BtsIMutI CAGTG 1 cut(s) 930
BveI ACCTGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 4 cut(s) 19, 38, 564, 683
Cfr13I GGNCC 2 cut(s) 308, 721
CseI GACGC 2 cut(s) 145, 672
Csp6I GTAC 2 cut(s) 509, 772
CviAII CATG 2 cut(s) 163, 961
CviQI GTAC 2 cut(s) 509, 772
DdeI CTNAG 4 cut(s) 28, 102, 154, 453
DinI GGCGCC 2 cut(s) 18, 37
DpnI GATC 6 cut(s) 43, 152, 240, 429, 444, 792
DpnII GATC 6 cut(s) 41, 150, 238, 427, 442, 790
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco130I CCWWGG 3 cut(s) 913, 960, 992
Eco31I GGTCTC 1 cut(s) 999
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 308, 721
Eco57I CTGAAG 2 cut(s) 353, 501
Eco88I CYCGRG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 62, 304
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 3 cut(s) 913, 960, 992
EgeI GGCGCC 2 cut(s) 18, 37
EheI GGCGCC 2 cut(s) 18, 37
ErhI CCWWGG 3 cut(s) 913, 960, 992
Esp3I CGTCTC 1 cut(s) 690
FaeI CATG 2 cut(s) 166, 964
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 2 cut(s) 162, 960
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 2 cut(s) 59, 499
Fnu4HI GCNGC 2 cut(s) 356, 747
FokI GGATG 3 cut(s) 62, 281, 748
Fsp4HI GCNGC 2 cut(s) 356, 747
FspBI CTAG 1 cut(s) 273
GlaI GCGC 4 cut(s) 18, 37, 563, 682
GluI GCNGC 2 cut(s) 356, 747
HaeII RGCGCY 2 cut(s) 20, 39
HaeIII GGCC 1 cut(s) 959
HapII CCGG 2 cut(s) 39, 1037
HgaI GACGC 2 cut(s) 145, 672
HhaI GCGC 4 cut(s) 19, 38, 564, 683
Hin1I GRCGYC 3 cut(s) 17, 36, 137
Hin1II CATG 2 cut(s) 166, 964
Hin6I GCGC 4 cut(s) 17, 36, 562, 681
HinP1I GCGC 4 cut(s) 17, 36, 562, 681
HinfI GANTC 2 cut(s) 397, 418
HpaII CCGG 2 cut(s) 39, 1037
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 5 cut(s) 60, 99, 125, 500, 586
Hpy188I TCNGA 5 cut(s) 135, 194, 333, 454, 660
Hpy188III TCNNGA 6 cut(s) 30, 216, 218, 689, 794, 877
Hpy8I GTNNAC 5 cut(s) 60, 99, 125, 500, 586
HpyAV CCTTC 2 cut(s) 328, 586
HpyCH4III ACNGT 5 cut(s) 435, 705, 848, 934, 973
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 53, 258, 321, 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 44, 76, 352
HpyF3I CTNAG 4 cut(s) 28, 102, 154, 453
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 3 cut(s) 17, 36, 137
Hsp92II CATG 2 cut(s) 166, 964
HspAI GCGC 4 cut(s) 17, 36, 562, 681
KasI GGCGCC 2 cut(s) 16, 35
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 6 cut(s) 41, 150, 238, 427, 442, 790
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 367, 733
LweI GCATC 3 cut(s) 40, 457, 682
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 1043
MalI GATC 6 cut(s) 43, 152, 240, 429, 444, 792
MboI GATC 6 cut(s) 41, 150, 238, 427, 442, 790
MboII GAAGA 5 cut(s) 494, 619, 634, 790, 809
MflI RGATCY 3 cut(s) 41, 442, 790
MhlI GDGCHC 2 cut(s) 624, 876
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 5 cut(s) 129, 231, 385, 626, 832
MluNI TGGCCA 1 cut(s) 959
Mly113I GGCGCC 2 cut(s) 17, 36
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 869, 916
MnlI CCTC 7 cut(s) 26, 60, 706, 712, 778, 932, 1034
Mox20I TGGCCA 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 908
MscI TGGCCA 1 cut(s) 959
MseI TTAA 3 cut(s) 672, 707, 987
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 959
MspI CCGG 2 cut(s) 39, 1037
MspR9I CCNGG 3 cut(s) 64, 306, 1038
Mva1269I GAATGC 2 cut(s) 70, 158
MvaI CCWGG 2 cut(s) 64, 306
MvnI CGCG 2 cut(s) 562, 683
MwoI GCNNNNNNNGC 4 cut(s) 33, 44, 76, 352
NarI GGCGCC 2 cut(s) 17, 36
NciI CCSGG 1 cut(s) 1038
NcoI CCATGG 1 cut(s) 960
NdeI CATATG 1 cut(s) 550
NdeII GATC 6 cut(s) 41, 150, 238, 427, 442, 790
NlaIII CATG 2 cut(s) 166, 964
NlaIV GGNNCC 2 cut(s) 18, 37
NmuCI GTSAC 1 cut(s) 1043
OliI CACNNNNGTG 1 cut(s) 974
PaeR7I CTCGAG 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 277
PctI GAATGC 2 cut(s) 70, 158
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 888
PfoI TCCNGGA 1 cut(s) 1036
PkrI GCNGC 2 cut(s) 357, 748
PleI GAGTC 1 cut(s) 426
PluTI GGCGCC 2 cut(s) 20, 39
PpsI GAGTC 1 cut(s) 426
PpuMI RGGWCCY 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 62, 304
PspGI CCWGG 2 cut(s) 62, 304
PspN4I GGNNCC 2 cut(s) 18, 37
PspPI GGNCC 2 cut(s) 308, 721
PspPPI RGGWCCY 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 3 cut(s) 41, 442, 790
RsaI GTAC 2 cut(s) 510, 773
RsaNI GTAC 2 cut(s) 509, 772
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 3 cut(s) 672, 707, 987
SatI GCNGC 2 cut(s) 356, 747
Sau3AI GATC 6 cut(s) 41, 150, 238, 427, 442, 790
Sau96I GGNCC 2 cut(s) 308, 721
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 3 cut(s) 64, 306, 1038
SduI GDGCHC 2 cut(s) 624, 876
SfaNI GCATC 3 cut(s) 40, 457, 682
SfoI GGCGCC 2 cut(s) 18, 37
Sfr274I CTCGAG 1 cut(s) 216
SinI GGWCC 2 cut(s) 308, 721
SlaI CTCGAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 5 cut(s) 129, 231, 385, 626, 832
SsiI CCGC 1 cut(s) 47
SspDI GGCGCC 2 cut(s) 16, 35
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 62, 304, 1036
StyI CCWWGG 3 cut(s) 913, 960, 992
TaaI ACNGT 5 cut(s) 435, 705, 848, 934, 973
TaiI ACGT 1 cut(s) 59
TaqI TCGA 4 cut(s) 217, 421, 690, 878
TasI AATT 5 cut(s) 129, 231, 385, 626, 832
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 3 cut(s) 672, 707, 987
Tru9I TTAA 3 cut(s) 672, 707, 987
TscAI CASTG 1 cut(s) 937
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 2 cut(s) 355, 746
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 6 cut(s) 151, 172, 261, 283, 365, 474
TspRI CASTG 1 cut(s) 937
Van91I CCANNNNNTGG 1 cut(s) 888
VpaK11BI GGWCC 2 cut(s) 308, 721
XapI RAATTY 1 cut(s) 626
XhoI CTCGAG 1 cut(s) 216
XmiI GTMKAC 2 cut(s) 59, 499
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.