Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

24058275 .. 24062162

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21420.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGTTCCAACACGGCGTCGTCAAGCTCAGGAGGCGCCGGATCTGCGGATGCAACGTCTACCAGGAGGCATTCGAAGCGACCCAAGTATTCAAGGTTTACTCAGCAGGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGATGGGTGATCTCAGCATTCATGCTCGTAAGCATAGTATTCATTCCCATTGGAGTTGCTTCCCTTTTTGCTTCTCGAGATGTTGTTGAAATTATTGATCGTTATGAAACTGATTGCATACCAACAACCAATAGAACTGATAAGGTCAGGTTTATACAAAGCCCTGGACCTAAAAAATGCAACAGAACTCTGAAGGTATCAAAGCGTATGAAGCAGCCTATATATGTATATTATCAGCTTGACAATTTCTACCAGAATCATCGCAGATATGTTAAGAGTCGAAGTGATCAACAGTTGAAAGATCCAAAGTCTGAGAGTGATGTAGATGCTTGTAAGCCTGAAGATATGGCAAATGGTCTACCTATTGTACCTTGTGGTCTTATTGCTTGGAGTTTGTTCAACGACACATATAGTTTCTCACGCAATAAACAGCAGTTGACGGTAAACAAGAAGGATATCTCTTGGAAGAGTGATAGGGAGCACAAGTTTGGCAAAAATGTCTTTCCAAAGAACTTTCAGAATGGATCTCTTAAAGGTGGCGCAACTCTCAATACATCCAAACCATTAAGTGAGCAAGAGGACCTTATTGTTTGGATGAGAACTGCTGCACTACCAACATTTAGAAAGCTGTACGGGAAGATAGAGGTGAATCTGGAAGAAAATGATACGATAGAAGTGATACTGGATAACAATTACAACACATACAGTTTTAATGGAAAAAAGAAGCTCGTGCTCTCGACCACCAGTTGGATTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTTGGAGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAGTTGTGTATCTCGTTAAGCCAAGGCAACTCGGAGACCCATCGTATTTGTCTTGGAACAGAAATCCAGGAGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

350

Amino Acids

39.51

Weight (kDa)

9.61

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	888
AccI	GTMKAC	2 cut(s)	59, 499
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	3 cut(s)	49, 437, 673
AcoI	YGGCCR	1 cut(s)	957
AcuI	CTGAAG	2 cut(s)	353, 501
AcyI	GRCGYC	2 cut(s)	17, 36
AfaI	GTAC	2 cut(s)	510, 773
AfiI	CCNNNNNNNGG	1 cut(s)	888
AgsI	TTSAA	4 cut(s)	93, 230, 439, 541
AjnI	CCWGG	3 cut(s)	62, 304, 1036
AleI	CACNNNNGTG	1 cut(s)	974
AluBI	AGCT	4 cut(s)	27, 379, 769, 868
AluI	AGCT	4 cut(s)	27, 379, 769, 868
Alw21I	GWGCWC	2 cut(s)	624, 876
Alw26I	GTCTC	1 cut(s)	999
AlwI	GGATC	3 cut(s)	49, 437, 673
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	957
ApeKI	GCWGC	2 cut(s)	355, 746
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	38, 683
AspS9I	GGNCC	2 cut(s)	308, 721
AsuHPI	GGTGA	2 cut(s)	160, 799
AsuII	TTCGAA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	308, 721
BalI	TGGCCA	1 cut(s)	959
BanI	GGYRCC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	869
Bbv12I	GWGCWC	2 cut(s)	624, 876
BbvI	GCAGC	2 cut(s)	367, 733
BccI	CCATC	2 cut(s)	138, 1018
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	3 cut(s)	64, 306, 1038
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	999
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	2 cut(s)	356, 747
BlsI	GCNGC	2 cut(s)	357, 748
Bme1390I	CCNGG	3 cut(s)	64, 306, 1038
Bme18I	GGWCC	2 cut(s)	308, 721
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	308, 721
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	64, 306, 1038
BmsI	GCATC	2 cut(s)	40, 457
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	17, 36
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	4 cut(s)	304, 913, 960, 992
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	888
Bse1I	ACTGG	2 cut(s)	828, 885
Bse3DI	GCAATG	1 cut(s)	918
BseBI	CCWGG	3 cut(s)	64, 306, 1038
BseDI	CCNNGG	4 cut(s)	304, 913, 960, 992
BseGI	GGATG	3 cut(s)	55, 695, 741
BseLI	CCNNNNNNNGG	1 cut(s)	888
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	4 cut(s)	42, 116, 168, 444
BseNI	ACTGG	2 cut(s)	828, 885
BseXI	GCAGC	2 cut(s)	367, 733
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	959
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	624, 876
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	888
BsmAI	GTCTC	1 cut(s)	999
BsmI	GAATGC	2 cut(s)	70, 158
BsnI	GGCC	1 cut(s)	959
Bso31I	GGTCTC	1 cut(s)	999
BsoBI	CYCGRG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	624, 876
Bsp143I	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
Bsp19I	CCATGG	1 cut(s)	960
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	959
BspCNI	CTCAG	4 cut(s)	41, 115, 167, 445
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	3 cut(s)	49, 437, 673
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	999
BsrDI	GCAATG	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	828, 885
BssECI	CCNNGG	4 cut(s)	304, 913, 960, 992
BssMI	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
BssNI	GRCGYC	2 cut(s)	17, 36
BssSI	CACGAG	1 cut(s)	869
BssT1I	CCWWGG	3 cut(s)	913, 960, 992
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	3 cut(s)	64, 306, 1038
Bst4CI	ACNGT	5 cut(s)	435, 583, 848, 934, 973
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	2 cut(s)	17, 36
BstBI	TTCGAA	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	28, 102, 154, 453
BstDSI	CCRYGG	1 cut(s)	960
BstF5I	GGATG	3 cut(s)	55, 695, 741
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 683
BstKTI	GATC	6 cut(s)	44, 153, 241, 430, 445, 668
BstMAI	GTCTC	1 cut(s)	999
BstMBI	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 44, 76, 352
BstNI	CCWGG	3 cut(s)	64, 306, 1038
BstSCI	CCNGG	3 cut(s)	62, 304, 1036
BstV1I	GCAGC	2 cut(s)	367, 733
BstX2I	RGATCY	3 cut(s)	41, 442, 665
BstYI	RGATCY	3 cut(s)	41, 442, 665
BsuRI	GGCC	1 cut(s)	959
BtgI	CCRYGG	1 cut(s)	960
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	55, 695, 741
BtsIMutI	CAGTG	1 cut(s)	930
CfoI	GCGC	2 cut(s)	38, 683
Cfr13I	GGNCC	2 cut(s)	308, 721
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	509, 772
CviAII	CATG	2 cut(s)	163, 961
CviQI	GTAC	2 cut(s)	509, 772
DdeI	CTNAG	4 cut(s)	28, 102, 154, 453
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	6 cut(s)	43, 152, 240, 429, 444, 667
DpnII	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
EaeI	YGGCCR	1 cut(s)	957
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	3 cut(s)	913, 960, 992
Eco31I	GGTCTC	1 cut(s)	999
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	308, 721
Eco57I	CTGAAG	2 cut(s)	353, 501
Eco88I	CYCGRG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	3 cut(s)	62, 304, 1036
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	913, 960, 992
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	3 cut(s)	913, 960, 992
FaeI	CATG	2 cut(s)	166, 964
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FatI	CATG	2 cut(s)	162, 960
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	59, 499
Fnu4HI	GCNGC	2 cut(s)	356, 747
FokI	GGATG	3 cut(s)	62, 682, 748
Fsp4HI	GCNGC	2 cut(s)	356, 747
GlaI	GCGC	2 cut(s)	37, 682
GluI	GCNGC	2 cut(s)	356, 747
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	959
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	38, 683
Hin1I	GRCGYC	2 cut(s)	17, 36
Hin1II	CATG	2 cut(s)	166, 964
Hin6I	GCGC	2 cut(s)	36, 681
HinP1I	GCGC	2 cut(s)	36, 681
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	3 cut(s)	397, 418, 790
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	160, 799
Hpy166II	GTNNAC	5 cut(s)	60, 99, 500, 579, 586
Hpy188I	TCNGA	4 cut(s)	333, 454, 660, 1004
Hpy188III	TCNNGA	5 cut(s)	30, 216, 218, 794, 877
Hpy8I	GTNNAC	5 cut(s)	60, 99, 500, 579, 586
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	328, 586
HpyCH4III	ACNGT	5 cut(s)	435, 583, 848, 934, 973
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	53, 258, 321, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 44, 76, 352
HpyF3I	CTNAG	4 cut(s)	28, 102, 154, 453
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	17, 36
Hsp92II	CATG	2 cut(s)	166, 964
HspAI	GCGC	2 cut(s)	36, 681
KasI	GGCGCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	2 cut(s)	367, 733
LweI	GCATC	2 cut(s)	40, 457
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	6 cut(s)	43, 152, 240, 429, 444, 667
MboI	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
MboII	GAAGA	4 cut(s)	494, 619, 790, 809
MflI	RGATCY	3 cut(s)	41, 442, 665
MhlI	GDGCHC	2 cut(s)	624, 876
MlsI	TGGCCA	1 cut(s)	959
MluCI	AATT	4 cut(s)	129, 231, 385, 832
MluNI	TGGCCA	1 cut(s)	959
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	3 cut(s)	33, 869, 916
MnlI	CCTC	6 cut(s)	26, 60, 712, 778, 932, 1034
Mox20I	TGGCCA	1 cut(s)	959
MroXI	GAANNNNTTC	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	959
MseI	TTAA	5 cut(s)	414, 672, 707, 852, 987
MslI	CAYNNNNRTG	1 cut(s)	974
Msp20I	TGGCCA	1 cut(s)	959
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	3 cut(s)	64, 306, 1038
Mva1269I	GAATGC	2 cut(s)	70, 158
MvaI	CCWGG	3 cut(s)	64, 306, 1038
MwoI	GCNNNNNNNGC	4 cut(s)	33, 44, 76, 352
NarI	GGCGCC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	960
NdeII	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
NlaIII	CATG	2 cut(s)	166, 964
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	1043
NspV	TTCGAA	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	216
PctI	GAATGC	2 cut(s)	70, 158
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	2 cut(s)	397, 790
PflMI	CCANNNNNTGG	1 cut(s)	888
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	2 cut(s)	357, 748
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	721
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	3 cut(s)	62, 304, 1036
PspGI	CCWGG	3 cut(s)	62, 304, 1036
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	308, 721
PspPPI	RGGWCCY	1 cut(s)	721
PsuI	RGATCY	3 cut(s)	41, 442, 665
RsaI	GTAC	2 cut(s)	510, 773
RsaNI	GTAC	2 cut(s)	509, 772
RseI	CAYNNNNRTG	1 cut(s)	974
SaqAI	TTAA	5 cut(s)	414, 672, 707, 852, 987
SatI	GCNGC	2 cut(s)	356, 747
Sau3AI	GATC	6 cut(s)	41, 150, 238, 427, 442, 665
Sau96I	GGNCC	2 cut(s)	308, 721
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	3 cut(s)	64, 306, 1038
SduI	GDGCHC	2 cut(s)	624, 876
SfaNI	GCATC	2 cut(s)	40, 457
SfoI	GGCGCC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	74
SinI	GGWCC	2 cut(s)	308, 721
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	129, 231, 385, 832
SsiI	CCGC	1 cut(s)	47
SspDI	GGCGCC	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	62, 304, 1036
StyI	CCWWGG	3 cut(s)	913, 960, 992
TaaI	ACNGT	5 cut(s)	435, 583, 848, 934, 973
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	74, 217, 421, 878
TasI	AATT	4 cut(s)	129, 231, 385, 832
TfiI	GAWTC	2 cut(s)	397, 790
Tru1I	TTAA	5 cut(s)	414, 672, 707, 852, 987
Tru9I	TTAA	5 cut(s)	414, 672, 707, 852, 987
TscAI	CASTG	1 cut(s)	937
TseFI	GTSAC	1 cut(s)	1043
TseI	GCWGC	2 cut(s)	355, 746
Tsp45I	GTSAC	1 cut(s)	1043
TspDTI	ATGAA	4 cut(s)	151, 172, 261, 365
TspRI	CASTG	1 cut(s)	937
Van91I	CCANNNNNTGG	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	308, 721
XhoI	CTCGAG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	59, 499
XmnI	GAANNNNTTC	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.