Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000265.1

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

69402 .. 71522

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000265.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgaaatctcccatttatgtctactatcagattgatcactactttcagaatcatcgccgatatgttaaaagtagaagtgacgatcagttgcggagcgtggcaaaggaaaatagcacaagcgactgtgcacctgaacgctttgcaaaaaatggtcaaccaattgttccttgtggcctcgttgcatggagtttgtttaatgacacatataagttttcagtgaaaaacaaaacaatagcggtcagcaaaaaggacatcacatggaaaagtgaccgtgagaaaaagttttcaagcagtgtctatcctaagaactttcagtctgggggtttgattggaggagcaaagctcaattctagcatacctctgagccaacaagaggatcttattgtttggatgcgaactgcagcaatgccatcttttagaaaactgtatgggaggatagaagtggaccttgaggctcatgatgaaataacaatagaactacagaataactataatacctacagctttaaaggcagcaagtcagtgatactttctactgcgagttggattggtggaaagaatgatctaatgggcatagcataccttaccattggcggaatgtgtttgttcttggcaatatgcttcatacttatgtatgtgctcaagccgagacctcttggggatacctcctacttgtcttggaatagaaatgcatcaggaggacgtctaaatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

238

Amino Acids

27.01

Weight (kDa)

9.45

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	3 cut(s)	91, 236, 594
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	709
AcyI	GRCGYC	1 cut(s)	703
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	288
AluBI	AGCT	2 cut(s)	343, 504
AluI	AGCT	2 cut(s)	343, 504
Alw21I	GWGCWC	2 cut(s)	130, 642
Alw26I	GTCTC	1 cut(s)	643
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	401, 513
ApoI	RAATTY	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	130, 642
BbvI	GCAGC	2 cut(s)	413, 525
BccI	CCATC	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	3 cut(s)	399, 479, 499
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	2 cut(s)	402, 514
BlsI	GCNGC	2 cut(s)	403, 515
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmsI	GCATC	2 cut(s)	381, 701
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpuEI	CTTGAG	2 cut(s)	470, 626
BsaHI	GRCGYC	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	413, 525
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	130, 642
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	2 cut(s)	130, 642
Bsp143I	GATC	4 cut(s)	34, 82, 376, 562
BspACI	CCGC	3 cut(s)	91, 236, 594
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	411
BssMI	GATC	4 cut(s)	34, 82, 376, 562
BssNI	GRCGYC	1 cut(s)	703
Bst4CI	ACNGT	3 cut(s)	125, 272, 426
BstACI	GRCGYC	1 cut(s)	703
BstDEI	CTNAG	2 cut(s)	303, 362
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	4 cut(s)	37, 85, 379, 565
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	34, 82, 376, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstSFI	CTRYAG	3 cut(s)	399, 479, 499
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	413, 525
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	222, 298, 528
CciI	TCATGA	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	445
CviAII	CATG	3 cut(s)	183, 258, 458
CviJI	RGCY	6 cut(s)	174, 343, 366, 455, 504, 646
CviKI_1	RGCY	6 cut(s)	174, 343, 366, 455, 504, 646
DdeI	CTNAG	2 cut(s)	303, 362
DpnI	GATC	4 cut(s)	36, 84, 378, 564
DpnII	GATC	4 cut(s)	34, 82, 376, 562
DraI	TTTAAA	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	694
FaeI	CATG	3 cut(s)	186, 261, 461
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 432, 464
FatI	CATG	3 cut(s)	182, 257, 457
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	402, 514
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	402, 514
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	402, 514
HaeIII	GGCC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	3 cut(s)	186, 261, 461
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	49
Hpy166II	GTNNAC	4 cut(s)	22, 128, 155, 445
Hpy188I	TCNGA	3 cut(s)	30, 48, 363
Hpy188III	TCNNGA	2 cut(s)	458, 696
Hpy8I	GTNNAC	4 cut(s)	22, 128, 155, 445
HpyCH4III	ACNGT	3 cut(s)	125, 272, 426
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	5 cut(s)	128, 143, 182, 401, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	2 cut(s)	303, 362
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	3 cut(s)	186, 261, 461
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	34, 82, 376, 562
LmnI	GCTCC	2 cut(s)	93, 335
LpnPI	CCDG	3 cut(s)	144, 303, 681
Lsp1109I	GCAGC	2 cut(s)	413, 525
LweI	GCATC	2 cut(s)	381, 701
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	77, 266
MalI	GATC	4 cut(s)	36, 84, 378, 564
MboI	GATC	4 cut(s)	34, 82, 376, 562
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	130, 642
MluCI	AATT	3 cut(s)	159, 346, 709
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	9 cut(s)	185, 326, 367, 369, 426, 445, 663, 676, 692
Mph1103I	ATGCAT	1 cut(s)	694
MseI	TTAA	4 cut(s)	66, 195, 507, 715
MslI	CAYNNNNRTG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	510
NdeII	GATC	4 cut(s)	34, 82, 376, 562
NlaIII	CATG	3 cut(s)	186, 261, 461
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	77, 266
NsiI	ATGCAT	1 cut(s)	694
PagI	TCATGA	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	403, 515
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	66, 195, 507, 715
SatI	GCNGC	2 cut(s)	402, 514
Sau3AI	GATC	4 cut(s)	34, 82, 376, 562
Sau96I	GGNCC	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	130, 642
SfaNI	GCATC	2 cut(s)	381, 701
SfcI	CTRYAG	3 cut(s)	399, 479, 499
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	449, 641
SmoI	CTYRAG	2 cut(s)	449, 641
Sse9I	AATT	3 cut(s)	159, 346, 709
SsiI	CCGC	3 cut(s)	91, 236, 594
SspMI	CTAG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	125, 272, 426
TaiI	ACGT	1 cut(s)	706
TasI	AATT	3 cut(s)	159, 346, 709
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	4 cut(s)	66, 195, 507, 715
Tru9I	TTAA	4 cut(s)	66, 195, 507, 715
TscAI	CASTG	3 cut(s)	222, 298, 528
TseFI	GTSAC	2 cut(s)	77, 266
TseI	GCWGC	2 cut(s)	401, 513
Tsp45I	GTSAC	2 cut(s)	77, 266
TspDTI	ATGAA	3 cut(s)	17, 477, 613
TspRI	CASTG	3 cut(s)	222, 298, 528
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	709
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.