Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

77620790 .. 77624725

Gene Structure 3936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGCAGCCTATATATGTGTACTACCAGCTTGATAATTTCTATCAGAATCACCGCAGGTATGTGAAGAGCCGAAGTGATAAACAGTTGAAAGATCCAAACTCTGCAAATACAGTGACTGATTGTAAGCCTGAAGACAAGGCAAATGGTGCGTCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTCAATGACACTTATAGTTTTTCCCGCAACCAAAGCGAGCCATTGCCAGTGAACAAGAAGGGTATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAAGGTCTTTCCAACAAACTTTCAGAATTCAACTCTTAGAGGTGGTGCGTCTCTCAATGAATCCATTCCATTGAGTGAGCAGGAGGACCTTATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGAAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGAGAACAATTACAACACCTACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGAAATCCTGGAGGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

234

Amino Acids

26.67

Weight (kDa)

9.38

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	1 - 218	2.4e-84	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	543
AciI	CCGC	3 cut(s)	55, 214, 594
AclWI	GGATC	3 cut(s)	89, 453, 656
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	2 cut(s)	281, 316
AcuI	CTGAAG	2 cut(s)	153, 434
AfaI	GTAC	3 cut(s)	23, 162, 528
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	91, 193, 321
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	3 cut(s)	31, 179, 523
AluI	AGCT	3 cut(s)	31, 179, 523
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	89, 453, 656
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	7, 401
ApoI	RAATTY	2 cut(s)	281, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	2 cut(s)	354, 563
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	702
BalI	TGGCCA	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	19, 388
BciT130I	CCWGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	345
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	8, 402
BlsI	GCNGC	2 cut(s)	9, 403
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	568, 615, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	3 cut(s)	230, 404, 573
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	568, 615, 647
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	3 cut(s)	230, 404, 573
BseNI	ACTGG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	19, 388
BshFI	GGCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	614
Bsp1286I	GDGCHC	3 cut(s)	174, 279, 702
Bsp143I	GATC	3 cut(s)	94, 445, 661
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	3 cut(s)	55, 214, 594
BspANI	GGCC	1 cut(s)	614
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	3 cut(s)	89, 453, 656
BspQI	GCTCTTC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	230, 404, 573
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	568, 615, 647
BssMI	GATC	3 cut(s)	94, 445, 661
BssT1I	CCWWGG	3 cut(s)	568, 615, 647
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	4 cut(s)	87, 115, 503, 589
Bst6I	CTCTTC	2 cut(s)	62, 257
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	3 cut(s)	97, 448, 664
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	94, 445, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 222, 600
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	19, 388
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	3 cut(s)	94, 445, 661
BstYI	RGATCY	3 cut(s)	94, 445, 661
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	120, 243, 585
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	2 cut(s)	141, 327
Csp6I	GTAC	3 cut(s)	22, 161, 527
CviAII	CATG	5 cut(s)	165, 258, 470, 616, 678
CviQI	GTAC	3 cut(s)	22, 161, 527
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	3 cut(s)	96, 447, 663
DpnII	GATC	3 cut(s)	94, 445, 661
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	62, 257
EarI	CTCTTC	2 cut(s)	62, 257
Eco130I	CCWWGG	3 cut(s)	568, 615, 647
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	153, 434
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	3 cut(s)	568, 615, 647
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	3 cut(s)	568, 615, 647
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	5 cut(s)	168, 261, 473, 619, 681
FatI	CATG	5 cut(s)	164, 257, 469, 615, 677
FauI	CCCGC	2 cut(s)	221, 587
Fnu4HI	GCNGC	2 cut(s)	8, 402
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	8, 402
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	2 cut(s)	8, 402
HaeIII	GGCC	1 cut(s)	614
HgaI	GACGC	2 cut(s)	141, 327
Hin1II	CATG	5 cut(s)	168, 261, 473, 619, 681
HinfI	GANTC	2 cut(s)	49, 350
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	22, 241
Hpy188I	TCNGA	3 cut(s)	48, 315, 419
Hpy8I	GTNNAC	2 cut(s)	22, 241
HpyAV	CCTTC	2 cut(s)	241, 675
HpyCH4III	ACNGT	4 cut(s)	87, 115, 503, 589
HpyCH4V	TGCA	2 cut(s)	107, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 222, 600
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	5 cut(s)	168, 261, 473, 619, 681
Kzo9I	GATC	3 cut(s)	94, 445, 661
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	41, 43, 144, 249, 256, 356, 541, 596, 678
Lsp1109I	GCAGC	2 cut(s)	19, 388
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	115, 266, 472
MalI	GATC	3 cut(s)	96, 447, 663
MboI	GATC	3 cut(s)	94, 445, 661
MboII	GAAGA	5 cut(s)	79, 146, 274, 440, 445
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	3 cut(s)	94, 445, 661
MhlI	GDGCHC	3 cut(s)	174, 279, 702
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	6 cut(s)	37, 281, 316, 422, 487, 627
MluNI	TGGCCA	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	4 cut(s)	323, 367, 433, 689
Mox20I	TGGCCA	1 cut(s)	614
MroXI	GAANNNNTTC	2 cut(s)	354, 563
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	693
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	3 cut(s)	149, 222, 600
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	3 cut(s)	94, 445, 661
NlaIII	CATG	5 cut(s)	168, 261, 473, 619, 681
NmuCI	GTSAC	3 cut(s)	115, 266, 472
NspI	RCATGY	1 cut(s)	473
PciI	ACATGT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	2 cut(s)	354, 563
PfeI	GAWTC	2 cut(s)	49, 350
PflMI	CCANNNNNTGG	1 cut(s)	543
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	9, 403
PpuMI	RGGWCCY	1 cut(s)	376
PscI	ACATGT	1 cut(s)	469
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	376
PspPPI	RGGWCCY	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	94, 445, 661
RsaI	GTAC	3 cut(s)	23, 162, 528
RsaNI	GTAC	3 cut(s)	22, 161, 527
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	2 cut(s)	8, 402
Sau3AI	GATC	3 cut(s)	94, 445, 661
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	3 cut(s)	174, 279, 702
SetI	ASST	9 cut(s)	33, 62, 181, 297, 334, 381, 444, 500, 525
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	6 cut(s)	37, 281, 316, 422, 487, 627
SsiI	CCGC	3 cut(s)	55, 214, 594
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	3 cut(s)	568, 615, 647
TaaI	ACNGT	4 cut(s)	87, 115, 503, 589
TasI	AATT	6 cut(s)	37, 281, 316, 422, 487, 627
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	49, 350
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	3 cut(s)	120, 243, 592
TseFI	GTSAC	3 cut(s)	115, 266, 472
TseI	GCWGC	2 cut(s)	7, 401
Tsp45I	GTSAC	3 cut(s)	115, 266, 472
TspDTI	ATGAA	3 cut(s)	17, 246, 363
TspRI	CASTG	3 cut(s)	120, 243, 592
Van91I	CCANNNNNTGG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	281, 316
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	2 cut(s)	354, 563
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.